Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0908
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14

>SB_23320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 31/85 (36%), Positives = 54/85 (63%)
 Frame = +3

Query: 255 VKELIEQSLRFGRMLDSDHLPLHHFFIVLEHVMRHXXXXXXXXXXXXXELWDILQMVEKY 434
           +K LIE +L  G+++  +H P   FF+++E+++RH             + W  L+ +EK 
Sbjct: 53  IKTLIESALEVGKVIGEEHEPFQQFFVIIENILRHGLKLKRNLLGQRRDYWAALEALEKI 112

Query: 435 SPEAADITASVRDLPTVKTAMGRAR 509
           +PE+A+IT SVR+LP++KT+ G+ R
Sbjct: 113 APESAEITNSVRNLPSIKTSHGKGR 137



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 20/40 (50%), Positives = 33/40 (82%)
 Frame = +2

Query: 593 EYFEPHALMLNEEAVIITGLLVGLNVVDCNLCXKEEDLDS 712
           E++E HAL++ +E ++I+GLLVG+NV+DCN   K ++LD+
Sbjct: 768 EWYESHALLMQDEGIVISGLLVGINVIDCNFDLKGDNLDT 807



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 18/29 (62%), Positives = 25/29 (86%)
 Frame = +2

Query: 491 SNGPRSAWLRLALMQKRLADYLRILLEHR 577
           S+G   AW RLALMQK+LADY+RI++E++
Sbjct: 132 SHGKGRAWTRLALMQKKLADYIRIIVENK 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,880,381
Number of Sequences: 59808
Number of extensions: 484520
Number of successful extensions: 1189
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)