Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0908
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose 6-pho...    29   4.1  
U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose 6-pho...    29   4.1  
AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative treh...    29   4.1  
AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans trehalose-6-p...    29   4.1  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     28   9.4  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    28   9.4  
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ...    28   9.4  

>U58737-5|ABC71794.1| 1294|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform b protein.
          Length = 1294

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 SLAVASLLYCPRTCHASWTQTEKGTPRT*KGAM 406
           S +VA L Y  RTC+A W + +K +    KG M
Sbjct: 103 SESVAILKYTVRTCYAIWKKRQKNSEIALKGLM 135


>U58737-4|AAK39395.3| 1331|Caenorhabditis elegans Trehalose
           6-phosphate synthaseprotein 1, isoform a protein.
          Length = 1331

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 SLAVASLLYCPRTCHASWTQTEKGTPRT*KGAM 406
           S +VA L Y  RTC+A W + +K +    KG M
Sbjct: 140 SESVAILKYTVRTCYAIWKKRQKNSEIALKGLM 172


>AJ811573-1|CAH18875.1| 1331|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1331

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 SLAVASLLYCPRTCHASWTQTEKGTPRT*KGAM 406
           S +VA L Y  RTC+A W + +K +    KG M
Sbjct: 140 SESVAILKYTVRTCYAIWKKRQKNSEIALKGLM 172


>AJ512332-1|CAD54506.1| 1331|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1331

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 SLAVASLLYCPRTCHASWTQTEKGTPRT*KGAM 406
           S +VA L Y  RTC+A W + +K +    KG M
Sbjct: 140 SESVAILKYTVRTCYAIWKKRQKNSEIALKGLM 172


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 115  PIERSSSSKDERWPELLISRPQKTYNS 195
            PI RS S++DE+   + IS P + YNS
Sbjct: 1375 PIIRSPSARDEKVHRVAISPPIRDYNS 1401


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical protein
            F35H10.10 protein.
          Length = 1404

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 115  PIERSSSSKDERWPELLISRPQKTYNS 195
            PI RS S++DE+   + IS P + YNS
Sbjct: 1375 PIIRSPSARDEKVHRVAISPPIRDYNS 1401


>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 5
           protein.
          Length = 1434

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 260 LHISFEIFTRLLRSMTTGSRVFELYVFCGRDI 165
           LH+ F+ + ++L  + T   + ELY+ C RD+
Sbjct: 650 LHLRFKFYPQILDFIKTDVTMNELYLQCRRDV 681


>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.4 protein.
          Length = 1393

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 260 LHISFEIFTRLLRSMTTGSRVFELYVFCGRDI 165
           LH+ F+ + ++L  + T   + ELY+ C RD+
Sbjct: 609 LHLRFKFYPQILDFIKTDVTMNELYLQCRRDV 640


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,482,607
Number of Sequences: 27780
Number of extensions: 359210
Number of successful extensions: 858
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)