Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0908
         (829 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    32   0.53 
At5g39570.1 68418.m04793 expressed protein                             29   2.8  
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE...    29   2.8  
At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protei...    29   5.0  

>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
           contains Pfam PF02138: Beige/BEACH domain; similar to
           LBA isoform gamma (GI:10257405) [Mus musculus]; similar
           to beige-like protein (CDC4L) - Homo sapiens; similar to
           Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
           protein homolog implicated in neuronal membrane traffic
           (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +1

Query: 112 HPIERSSSSKDERWP----ELLISRPQKTYNSKTRDPVVIERSNLVN 240
           HP +RSS +K E WP    E+LIS  +K    ++  P   E  +L++
Sbjct: 775 HPEKRSSLTKMEEWPEWILEILISNYEKDAGKQSASPGSAEEEDLIH 821


>At5g39570.1 68418.m04793 expressed protein
          Length = 386

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 206 SRVFELYVFCGRDIRSSGHLSSFEDEDLSMG*DLTEDID--DVGDTSASFSLADAI 45
           SRV +L +  GR +  S  L   E+  LSM  DL + +D   VGD S S S++ A+
Sbjct: 102 SRVMDLVMVEGRRLNRSMDLVVVEELRLSMVGDLNQGLDLVMVGDRSLSMSVSLAM 157


>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
           (incomplete root hair elongation) [Arabidopsis thaliana]
           gi|6729346|dbj|BAA89783; contains protein kinase domain
           Pfam:PF00069
          Length = 1296

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 411 ILQMVEKYSPEAADITASVRDLPTVKTAMGRARLGCDWR 527
           +L  +EK  P  A  + S   +P+ K A  + + G DW+
Sbjct: 447 VLHSIEKIPPSGAGRSYSAAKVPSTKKAYSQEQHGLDWK 485


>At5g25490.1 68418.m03033 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 170

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +1

Query: 589 GGIFRTPRADAE----RGSCNYHRFAGRSQCCR 675
           GG  R+P    +    R  CN H FA RS+C R
Sbjct: 125 GGTGRSPWKSGDWICPRSGCNEHNFASRSECFR 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,579,874
Number of Sequences: 28952
Number of extensions: 337056
Number of successful extensions: 871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)