Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0907
         (863 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058423-1|AAL13652.1|  501|Drosophila melanogaster GH20077p pro...    32   1.2  
AE013599-1964|AAF58198.1|  501|Drosophila melanogaster CG10209-P...    32   1.2  
AF033104-1|AAB95091.3| 1924|Drosophila melanogaster 89B helicase...    30   4.7  

>AY058423-1|AAL13652.1|  501|Drosophila melanogaster GH20077p
           protein.
          Length = 501

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 77  PXPNQYTRYPSMPHN---PYGAQMHTQLYQQNSRLDIQIDHQRVQEVNTQFDNTGQYXHX 247
           P PN++  +P M HN   P G   + Q   Q  +      HQ+ Q+   Q    GQ  H 
Sbjct: 423 PPPNEHLHHPQMAHNIMFPLGQLRNEQPTAQQHQHG-HNPHQQQQQHPHQQQQQGQQHHP 481

Query: 248 PTGIMTXXSE 277
           PT   +  SE
Sbjct: 482 PTIFGSTASE 491


>AE013599-1964|AAF58198.1|  501|Drosophila melanogaster CG10209-PA
           protein.
          Length = 501

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 77  PXPNQYTRYPSMPHN---PYGAQMHTQLYQQNSRLDIQIDHQRVQEVNTQFDNTGQYXHX 247
           P PN++  +P M HN   P G   + Q   Q  +      HQ+ Q+   Q    GQ  H 
Sbjct: 423 PPPNEHLHHPQMAHNIMFPLGQLRNEQPTAQQHQHG-HNPHQQQQQHPHQQQQQGQQHHP 481

Query: 248 PTGIMTXXSE 277
           PT   +  SE
Sbjct: 482 PTIFGSTASE 491


>AF033104-1|AAB95091.3| 1924|Drosophila melanogaster 89B helicase
           protein.
          Length = 1924

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 573 RRHSLVPXGAVFCLPDFLVPL 511
           R+HSL P  A+ CLPD L P+
Sbjct: 937 RQHSLAPSAALHCLPDKLNPV 957


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,321,747
Number of Sequences: 53049
Number of extensions: 515822
Number of successful extensions: 1218
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4168047156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)