Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0907
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.52 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   2.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.4  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 50  RKRAXSTXLPXPNQYTRYPSMPHNPYGAQMHTQLYQQNSRLD-IQIDHQRVQEVN 211
           R+   S+  P P+  T  P   HN   ++ +    Q   +L+ ++I+    +EVN
Sbjct: 35  RRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVN 89


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 215 VYSLLVLVDGLFVYLAS--NSVGITVCASAXRKDYEACLGSVC 93
           +Y++L  + G+F YL++  N +   + ++  R+ ++  L + C
Sbjct: 325 IYTILTYMSGVFYYLSTTVNPLLYNIMSNKFREAFKLMLPNCC 367


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 373 DGNSNQNVXNFNFLNRPVS 429
           +G+ N N  NF  LN PV+
Sbjct: 385 NGDLNFNEVNFRILNAPVN 403


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 256 PCGXMXILASIIKLCIHFLYSLMVYLY 176
           PC  + +  ++  LC+  L   M  LY
Sbjct: 75  PCNYLLVSLAVSDLCVALLVMPMALLY 101


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 400 NFNFLNRPVSTHSPNEVKXIGVXTS 474
           N+N L RPVS ++   V  +G+  S
Sbjct: 31  NYNRLIRPVSNNNDTVVVKLGLRLS 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,404
Number of Sequences: 438
Number of extensions: 3151
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)