Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0906
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      30   0.36 

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 24/91 (26%), Positives = 41/91 (45%)
 Frame = -1

Query: 291 QYSLSPTXQWY*VHSAYIPXXXXXXXXXXLKIPTFI*EILTVPCRRVTARNNNNIIQMDS 112
           + SL+ + +WY V     P                +  ++T+   + T   N++I ++  
Sbjct: 519 EVSLNSSLRWYCVAILVTPLQLIINHLKDKTEMLSLDAVMTLILGKNTREVNSSIEEL-K 577

Query: 111 ITQLCCSYVLEFNIPNSFLHYKKNHKSRNLD 19
           IT  C S++LE NI N+FL Y +     N D
Sbjct: 578 ITD-CLSFLLEHNIFNTFLVYNEGIVKLNKD 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,104
Number of Sequences: 5004
Number of extensions: 48740
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)