Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0906
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45800| Best HMM Match : Rib_hydrolayse (HMM E-Value=1.8)            50   2e-06
SB_19998| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)                   29   6.4  
SB_39391| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.4  

>SB_45800| Best HMM Match : Rib_hydrolayse (HMM E-Value=1.8)
          Length = 464

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +1

Query: 346 PDPSPLTTDAEVEWVLEVIRYGLSLPLSEHSA--VRDCVRVACAWLXPLLAXHSXXXXXX 519
           P    L+T +EV+W +EV  YGL+LP++E     ++ CV V   WL  LL  +       
Sbjct: 2   PQQKVLSTPSEVDWAMEVFCYGLTLPMTEADGEIIKGCVNVYTEWLSVLLKSN-----PG 56

Query: 520 XXXXXXXXXXXHRYARKILRHLQXLFVPRPDESGD 624
                       +Y++++  HL+ LF  R D+  +
Sbjct: 57  KSIPDPLIHEPDKYSQRVFHHLRNLFKIRVDDGSN 91


>SB_19998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = +1

Query: 346 PDPSPLTTDAEVEWVLEVIRYGLSLPLSEHSA--VRDCVRVACAWLXPLLAXHSXXXXXX 519
           P    L+T +EV+W +EV  YGL+LP++E     ++ CV V   WL  LL  +       
Sbjct: 2   PQQKVLSTPSEVDWAMEVFCYGLTLPMTEADGEIIKGCVNVYTEWLSVLLKSN-----PG 56

Query: 520 XXXXXXXXXXXHRYARKILRHLQXLFVPRPDESGD 624
                       +Y++++  HL+ LF  R D+  +
Sbjct: 57  KSIPDPLIHEPDKYSQRVFHHLRNLFKIRVDDGSN 91


>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
          Length = 1206

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 551 HTDTQGRYCATYKXCLFQDQTKVAT 625
           H  T GRYC T+   L Q  + V T
Sbjct: 777 HPQTTGRYCGTFAPSLIQSTSSVVT 801


>SB_39391| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +2

Query: 209 VNHKDKDSDGMYAEWTQYHWXVGDK--EYWXQLE 304
           +  + + S   Y  W +Y W  GDK  E+W  LE
Sbjct: 181 IQRRMERSVDFYRGWDEYKWGFGDKNGEFWLGLE 214


>SB_15475| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 417

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 491 ASSGXNQAHATRTQSRTALCSLSGSDKPYL 402
           ASSG   A   R  +  A CS  G  +PYL
Sbjct: 46  ASSGSGSAREARLHNSAAWCSDGGDSEPYL 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,022,120
Number of Sequences: 59808
Number of extensions: 377149
Number of successful extensions: 937
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)