Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0906
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    29   3.0  
At5g12260.1 68418.m01441 expressed protein                             28   6.9  
At1g75980.1 68414.m08823 expressed protein                             28   6.9  
At5g51470.1 68418.m06383 auxin-responsive GH3 family protein sim...    28   9.1  
At3g28950.1 68416.m03616 avirulence-responsive protein-related /...    28   9.1  

>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 366 Y*C*GGVGSRSDQIWFVTATER-AQCCTGLRACRVCLVXPTT 488
           Y C  G  + +DQ W V A E  A   TG++A R  LV  T+
Sbjct: 402 YGCRAGAKNGTDQTWLVDAVENGAVILTGIKAERFVLVDNTS 443


>At5g12260.1 68418.m01441 expressed protein 
          Length = 624

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 206 RVNHKDKDSDGMYAEWTQYHWXVGDKEYWXQLEAEM 313
           +V H   D+ G+ A+W +  W + D E+   +E ++
Sbjct: 147 KVVHYRTDNAGLQAQWLEAWWPISDHEFAFVVEDDL 182


>At1g75980.1 68414.m08823 expressed protein
          Length = 225

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 485 SGXNQAHATRTQSRTALCSLSGSDKPYLI 399
           SG  + +A R++S TALC +S +   Y++
Sbjct: 134 SGKRKKNALRSESNTALCKVSTAKDTYIV 162


>At5g51470.1 68418.m06383 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 581

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 147 ARNNNNIIQMDSITQLCCSYVLEFNIPNSFLHYK 46
           A+  N+I+++D    + C YV+E ++ NS+  Y+
Sbjct: 477 AKYRNDIVEIDKNVLVECCYVVEESLNNSYRVYR 510


>At3g28950.1 68416.m03616 avirulence-responsive protein-related /
           avirulence induced gene (AIG) protein-related similar to
           SP|P54121 AIG2 protein {Arabidopsis thaliana}
          Length = 165

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 221 DKDSDGMYAEWTQYHWXVGDKEYWXQLEAEMLYW 322
           +KD   MY EW    W V   E + +   +ML W
Sbjct: 111 NKDDPRMYGEWDFEEWRVVHAEKFVETFRKMLEW 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,391,450
Number of Sequences: 28952
Number of extensions: 264223
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)