Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0905
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.73 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   6.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   6.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.8  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 407 YVTGYTMLMYDTIFVP*INGSYLRPLKKTT 318
           YV+GY   + D   +P +   YLRPL   T
Sbjct: 16  YVSGYLENIRDRRVLPTVEPGYLRPLIPAT 45


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 666 EGCTVFTKQSVTKNGKGMFKWLSN 595
           EGC  F ++S+TKN     K+ +N
Sbjct: 206 EGCKGFFRRSITKNAVYQCKYGNN 229


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 4   LPKIS*IIYAWFTAMHQCPLEFNSHPHIPLL 96
           +P+I   +  W       P+    HP IPLL
Sbjct: 522 MPRIQAEVNIWNPLTDTIPIHVWIHPWIPLL 552


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 4/12 (33%), Positives = 10/12 (83%)
 Frame = -3

Query: 402 YWLYHAYVRYYL 367
           YWL+H ++ +++
Sbjct: 599 YWLFHCHIEFHV 610


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 98  CRSGICGCELNSN 60
           C+ G+C  E+NS+
Sbjct: 140 CKKGVCTMEINSD 152


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,441
Number of Sequences: 336
Number of extensions: 4651
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)