Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0905
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    29   1.1  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    29   1.1  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    27   4.3  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   7.5  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   7.5  

>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 389 MLMYDTIFVP*INGSYLRPLKKTTIRKTAYNTQSYVISSLRCIQSWQLH 243
           M  Y T F   ++GS LRP+   +   T + T   V      + +WQ++
Sbjct: 212 MFYYTTYFYEMMSGSALRPIDLVSKNLTTFCTNVGVNKEANALGAWQIY 260


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 224 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 75
           ++LL       C  ++  L+LN+ +    L  +R +    ++  SGICGC
Sbjct: 93  KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 148 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 41
           RA P ++ G     N  + + Y D     MGIDAL+
Sbjct: 36  RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 267 MHSVMAVTYINLQFAGTFTGKI*YTMYLLLY 175
           + SV  V  +NL+F+  FTG +   +Y  LY
Sbjct: 97  LSSVKIVWALNLRFSTAFTGPMLANLYCALY 127


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 755 HKKLVTLHSNFKYGVKVQVANR 820
           H K+V  H++F Y ++VQ+ N+
Sbjct: 22  HAKIVDTHNDFPYLLRVQLRNK 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,439,419
Number of Sequences: 5004
Number of extensions: 72383
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)