Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0905
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   2.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    24   2.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 666 EGCTVFTKQSVTKNGKGMFKWLSN 595
           EGC  F ++S+TKN     K+ +N
Sbjct: 205 EGCKGFFRRSITKNAVYQCKYGNN 228


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 666 EGCTVFTKQSVTKNGKGMFKWLSN 595
           EGC  F ++S+TKN     K+ +N
Sbjct: 2   EGCKGFFRRSITKNAVYQCKYGNN 25


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 4   LPKIS*IIYAWFTAMHQCPLEFNSHPHIPLLQ 99
           LPK++  +  W       P+    HP +PLL+
Sbjct: 520 LPKLTLEVEEWNPLTDTVPIHTWIHPWLPLLR 551


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,240
Number of Sequences: 438
Number of extensions: 4962
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)