Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0905
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00...    33   0.31 
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ...    29   3.8  
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    28   6.6  

>At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 461

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
 Frame = -3

Query: 672 FKEGCTVFTKQSVTKNGKGMF------KWLSNN-AYEIQCAIFNC*LKF--ITELIT*R- 523
           F+EG T   + +V+KN K +F      +W++NN A +++  +      F  IT L+T + 
Sbjct: 103 FEEGVTTLIEFAVSKNVKHLFLDLSEPRWVTNNDAAQLEPGLIKLPESFYKITSLVTLKL 162

Query: 522 --CNYKPSLSINPFISKAVFIK 463
             C ++PS    P + K +F +
Sbjct: 163 FGCRFEPSRLAKPGMVKTMFFR 184


>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
           similar to SP|Q9ERA6 Tuftelin-interacting protein 11
           {Mus musculus}; contains Pfam profile PF01585: G-patch
           domain
          Length = 752

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   LPKIS*IIYAWFTAMHQCPLEFNSHPHIPLL 96
           LPK+S  I +W   +   P+ F  HP +P+L
Sbjct: 450 LPKLSIAIESWEPRLETVPIHFWVHPWLPVL 480


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 694 TRGSGVVV-TRGFFVDALEGRT*KIGHV 774
           TRG  VVV T G  +D +EGR+ K+G V
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEV 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,481
Number of Sequences: 28952
Number of extensions: 349016
Number of successful extensions: 624
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)