Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0904
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 37 0.003
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 32 0.089
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 29 0.83
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 1.9
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo... 27 3.4
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 5.9
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 5.9
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 7.8
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 26 7.8
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 7.8
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 37.1 bits (82), Expect = 0.003
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +3
Query: 516 IVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 629
I+ E++EK S+I++N+ + I++ GN+ G +RK H+
Sbjct: 84 IIYGFPEKEEKQSNIIYNSCIYITENGNLGGVYRKVHL 121
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 32.3 bits (70), Expect = 0.089
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = -3
Query: 482 KVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCS 303
++ V S ++A SH CF QN+ + + + +P T F+ LLK AFF
Sbjct: 232 QIAVFHQSKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDH 289
Query: 302 LTGR 291
L GR
Sbjct: 290 LFGR 293
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 29.1 bits (62), Expect = 0.83
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 543 EKHSDILWNTAVVISDTGNVIGKHRKNHI 629
E+ L+NTA+V +G +I HRK H+
Sbjct: 129 ERKDGKLYNTAMVFDPSGKLIAVHRKIHL 157
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.9 bits (59), Expect = 1.9
Identities = 9/18 (50%), Positives = 16/18 (88%)
Frame = +3
Query: 510 MVIVSSILERDEKHSDIL 563
+++VS++LE DEKH D++
Sbjct: 998 LIVVSNLLEMDEKHVDVV 1015
>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 185
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 492 TRHQVRMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 671
T+H V ++ S E+ EK+ ++W+ + + + K ++I + FNE + E
Sbjct: 87 TKHVVVYLVASYSTEKHEKNQVVVWDKILSSPEESKMFMKDTLSNI-QAHPFNEYSNQFE 145
Query: 672 G 674
G
Sbjct: 146 G 146
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 433 PWCEFAESAEDGPTTTFLRELAIKYEW*SCPRY*KGTRSIRTYF 564
P C + + G T L LA +EW PR G+R + F
Sbjct: 523 PSCHWTSVSLGGAVATLLMLLATIFEWIHVPRKFPGSRPLLKRF 566
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 348 IDDFLDFIENCFLLLVDWTIGGHRDGMLNYSSFTILGGRVCSS 220
I DF D IE+ + W++G G++ ++FT+L +C +
Sbjct: 472 ISDFWDDIESDMYGFLTWSMGSQIPGII--TAFTLLLASLCKN 512
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 555 PNASRPFLISRTRSPFVLDGEFPKEGRGRP 466
P ++P ++ T + +D PK GRGRP
Sbjct: 316 PPLNKPKILFGTSTENKIDENRPKRGRGRP 345
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 74 NNLTGRDLEEFNRIHFGRRNNLEI 145
NN+ R +EE N I G+R LE+
Sbjct: 8 NNILKRHIEEDNNIDNGKRKKLEL 31
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 44 ETHSLESII-NNNLTGRDLEEFNRIHFGRRNNLEIKLK 154
E H +E +I + N+T DL F + FG+ N ++ K
Sbjct: 369 EFHQVEGVICDRNITLGDLIGFLEVFFGKMNVKNLRFK 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,234
Number of Sequences: 5004
Number of extensions: 72257
Number of successful extensions: 252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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