Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0904
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 105 6e-23
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 33 0.29
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 32 0.50
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 32 0.50
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 31 1.2
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 30 2.0
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 3.5
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 29 3.5
01_06_1292 - 36037741-36039306 29 4.7
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 8.2
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 105 bits (251), Expect = 6e-23
Identities = 70/173 (40%), Positives = 88/173 (50%), Gaps = 6/173 (3%)
Frame = +1
Query: 256 GIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ-----ELWNMPFAFCT 420
G++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q E W MPFAFCT
Sbjct: 99 GLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEAWTMPFAFCT 158
Query: 421 REKQPWCEFAESAEDGPTTTFLRELAIKYEW-*SCPRY*KGTRSIRTYFGTLRL*LVTPE 597
REK+ WCEFAE DG +T FL++LA KY P + + T + +
Sbjct: 159 REKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVWNTAVV-IGNHG 215
Query: 598 T*SGNIARTTFRESAILTNPTTTWKVTXGHPVFATRYXKIRGEHSASGRHQRL 756
G + T + GHPVF T Y KI G + GRH L
Sbjct: 216 NIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKI-GVNICYGRHHPL 267
Score = 101 bits (242), Expect = 7e-22
Identities = 45/58 (77%), Positives = 49/58 (84%)
Frame = +3
Query: 510 MVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNXG 683
MVIVS ILERD H +I+WNTAVVI + GN+IG HRKNHIPRVGDFNES YYMEGN G
Sbjct: 187 MVIVSPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTG 244
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 33.1 bits (72), Expect = 0.29
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 543 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNXG 683
E+ ++ +N+ +I G +G +RK+HIP + E Y+ G+ G
Sbjct: 98 EEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTG 144
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +1
Query: 334 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYE 510
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + E
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELE 89
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 32.3 bits (70), Expect = 0.50
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 396 PQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSSFTILGGRVCSSL 217
P+L E D VNTL + + LD + L+ + G RD + ++LG R+ SL
Sbjct: 525 PKLKECDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSL 584
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 32.3 bits (70), Expect = 0.50
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 396 PQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSSFTILGGRVCSSL 217
P+L E D VNTL + + LD + L+ + G RD + ++LG R+ SL
Sbjct: 521 PKLKECDIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSL 580
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +3
Query: 543 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRV---GD--FNESNYYMEG 674
E+ S L+NT VI G + KHRK H+ + GD F ES+ + G
Sbjct: 67 ERSSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAG 115
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 236 PPRIVKEE*FS-IPSRCPPIVQSTSKRKQFSIKSRKSS 346
PPR+ E+ F IPS STSKRK+ ++ +K S
Sbjct: 350 PPRLFLEDQFDVIPSEAGSSHNSTSKRKEDEVRRKKGS 387
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 467 PSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 357
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 29.5 bits (63), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 543 EKHSDILWNTAVVISDTGNVIGKHRKNHI 629
E+ + L+NT V G + GKHRK H+
Sbjct: 134 ERSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>01_06_1292 - 36037741-36039306
Length = 521
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 226 ADPTPENCEGGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDV 351
ADP PE+C G I + T P + + +A F++ ++++
Sbjct: 449 ADPMPEHCPHGEFVREIPLATRIPEDAKLEAYFDEAAAVLEI 490
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 440 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 309
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,014,793
Number of Sequences: 37544
Number of extensions: 526961
Number of successful extensions: 1581
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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