Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0904
(850 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 32 0.68
SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08) 31 0.89
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 31 1.2
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 4.8
SB_56553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 29 6.3
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 28 8.3
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 31.9 bits (69), Expect = 0.68
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 513 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 629
++ SI ER L+NT++ +GN++GKHRK H+
Sbjct: 82 IVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHL 118
>SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)
Length = 303
Score = 31.5 bits (68), Expect = 0.89
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = -2
Query: 744 PSRSRMFTANLAVSGRKYRMARCYLPCSSWIR*NRRLSE-C---GSCDVSRSRFRCH*LQ 577
PS R+F A SG Y+ +C+ C+S LS C G+ V ++ FRC +
Sbjct: 165 PSNGRLFPNFCATSGNVYQ-EKCHFLCNSGYVAEGDLSRTCEATGTWSVVQTPFRCKKVY 223
Query: 576 PQCSKVCP 553
P+ + CP
Sbjct: 224 PKPTLTCP 231
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 513 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 629
++ SI ER L+NT++ +GN++GKHRK H+
Sbjct: 38 IVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHL 74
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 153 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREL--*RRNSSAFHRGAHRSSSQRAKE 314
K PR R S+SP SRP+ + P PR RR S RG+ RS S +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRRTPEDRRRS----RGSRRSPSPPKRE 1098
>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 156 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 239
+PR + L+ S+SPHT R R+S DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 405 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 295
G VP + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 238 PENCEGGIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 372
P N V I VP + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 971 PNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016
>SB_56553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +1
Query: 610 NIARTTFRESAILTNPTTTWKVTXGHPVFATRYXK-IRGEHSA------SGRH--QRLEL 762
N R + +L + +T W+VT G PV+ Y +RG A SG + +EL
Sbjct: 289 NDFRLSLPRMQLLKSQSTHWRVTTGFPVYGVDYRDYVRGNFLAFDIMTFSGADTCKPVEL 348
Query: 763 VDVRTXTGA 789
V++R GA
Sbjct: 349 VNIRGFVGA 357
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 552 NASRPFLISRTRSPFVLDGEFPKEGRGRPVFS*FGKLAPRLLLPC 418
N+++ F + RS DGE K GR FS KLA +L C
Sbjct: 382 NSAKSFTRNGARSIVRADGEERKFGRSEEEFSDLDKLAINILYDC 426
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 543 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 671
+K D LW A + D KH++N I R +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 513 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 620
++ SI ER L+NT++ +GN++GKHRK
Sbjct: 84 IVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRK 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,988,058
Number of Sequences: 59808
Number of extensions: 580866
Number of successful extensions: 1749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -