Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0904
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.2  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   6.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   8.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -3

Query: 512 HSYLMA--SSRRKVVVGPSSADSANSHHGCFSLV-QNAKGMFHNSWKQMMLTPSWPATSM 342
           H+Y+M   +S R     PS A+   S     +   Q ++G+   +      T  WPATS+
Sbjct: 728 HNYIMRGEASPRSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSNYSTT-RWPATSV 786

Query: 341 IFLT 330
           I  T
Sbjct: 787 ITTT 790


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 477 DLPSGTRHQVRMVIVSSILERDEKHSDILWNTAVVISD 590
           +L SG+    R    S  +  DE  SD+L+N  VV  D
Sbjct: 547 NLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSED 584


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 247 CEGGIVQHSIAVPTDRPVNEQKKAIFNKV 333
           C G  ++   A  TD  V  Q KAI NK+
Sbjct: 125 CIGEKLEEREAGKTDEVVFRQTKAIANKI 153


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 477 DLPSGTRHQVRMVIVSSILERDEKHSDILWNTAVVISD 590
           +L SG+    R    S  +  DE  SD+L+N  VV  D
Sbjct: 547 NLKSGSNTIERNSHESVFVVPDEVPSDVLYNRLVVSED 584


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 713 LXYLVANTGWPXVTFHVVVGFVKIADSRNVV 621
           + YL+    W   TF +++ F  +  S NV+
Sbjct: 61  MNYLLDTDQWGDKTFVIIMKFNGVPSSLNVI 91


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 135 LFRRPK*ILLNSSKSRPVKL 76
           LFR PK I +N+++ + +KL
Sbjct: 119 LFRGPKGIQINATELQKIKL 138


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 300 DWTIGGHRDGML 265
           +W +G H DG L
Sbjct: 518 EWKVGNHEDGYL 529


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 300 DWTIGGHRDGML 265
           +W +G H DG L
Sbjct: 433 EWKVGNHEDGYL 444


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 300 DWTIGGHRDGML 265
           +W +G H DG L
Sbjct: 752 EWKVGNHEDGYL 763


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 728 ILLRDGTNVLNLLMF 772
           ++ +DGTNV+ +++F
Sbjct: 232 LVYKDGTNVMGMIVF 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,787
Number of Sequences: 438
Number of extensions: 5459
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)