Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0902
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 131 1e-31
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 28 1.4
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 28 1.8
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 28 1.8
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 27 3.2
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.3
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 26 5.6
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 5.6
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 26 5.6
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.8
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 131 bits (317), Expect = 1e-31
Identities = 56/78 (71%), Positives = 65/78 (83%)
Frame = +2
Query: 20 RYSLHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLG 199
R+SL NNTLPLLTTKRVF RGV+EELLW I G T++ L+ KG+HIWD NGSR FLD+ G
Sbjct: 365 RFSLRNNTLPLLTTKRVFLRGVLEELLWFIHGDTNANHLSEKGIHIWDGNGSREFLDSRG 424
Query: 200 FTDREEGDLGPVYGFQWR 253
TDR+ GDLGP+YGFQWR
Sbjct: 425 LTDRKVGDLGPIYGFQWR 442
Score = 113 bits (272), Expect = 3e-26
Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 7/90 (7%)
Frame = +1
Query: 259 GAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFY 438
GA+Y+DC TDYT +G+DQL VI ++K NP DRR+++ AWN + +MALPPCH QFY
Sbjct: 445 GAQYVDCDTDYTNKGVDQLAQVISTLKLNPYDRRIILSAWNPLAIPEMALPPCHIFCQFY 504
Query: 439 VAD-----GK--LSCLLYQRSADMGLGVPF 507
V++ GK LS ++YQRSADMGLGVPF
Sbjct: 505 VSEPCKPGGKPQLSSMMYQRSADMGLGVPF 534
Score = 103 bits (248), Expect = 2e-23
Identities = 49/94 (52%), Positives = 64/94 (68%), Gaps = 3/94 (3%)
Frame = +3
Query: 489 GLRSSIYIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTL 668
GL IASYSLLTHMIAH+ GY+A EF+H GD H+Y +H+E L+ QL+R PK FP L
Sbjct: 529 GLGVPFNIASYSLLTHMIAHMCGYEAAEFVHVMGDCHIYNDHLEALQTQLERVPKAFPKL 588
Query: 669 EF---ARKIESIDDFKYEDFIIKDYKPHPKIEME 761
F A+ I SID F +DF ++ Y P+ I+M+
Sbjct: 589 FFKRDAKDIGSIDSFSVDDFAVEGYNPYGPIKMK 622
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -3
Query: 150 TPLAANAFESVDPE--IIHSSSSITPL 76
TP + ES+ PE II SSSS+TPL
Sbjct: 367 TPKLTSLMESIFPEQTIIRSSSSVTPL 393
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 243 NPYTGPRSPSSLSVNPKLSRKFLDPFASQMCTPLAANAFESV 118
+P T P S +V +S ++LDPF T +F SV
Sbjct: 191 SPVTQPELDQSSAVEESISTRYLDPFKLTDPTAYRVESFTSV 232
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 484 QHFFGTTSKIISHQPHRIVLNSDMVVVPSS*GLKNSM 374
Q+FF TS S PHR V D ++ SS G+ N M
Sbjct: 508 QNFFHQTSPQFSAVPHRKVSAQDTNLMGSSPGMYNHM 544
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 427 LNSDMVVVPSS*GLKNSMHISTFFCLLDCS 338
+N +MV P S L +S + FCL DCS
Sbjct: 1 MNCEMVTSPESVNLGDSNRAVSPFCLPDCS 30
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 373 AWNSSDLKKMALPPCHCLAQFYVAD 447
++N SD++ + L PCH L + +V++
Sbjct: 383 SFNVSDMQTLGLNPCHSLDKSFVSE 407
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 543 AHVTGYQAGEFI--HTTGDTHVYLNHIEPLKIQLQREPK 653
A +T ++ G F +TTG + YL H+E ++I R K
Sbjct: 466 AELTEFEVGLFTGEYTTGASKEYLVHLEQMRIANNRARK 504
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 331 SIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFYVADGKLSCL 465
++ +N +L+ + LK L C+C+ F K+SCL
Sbjct: 259 ALSSNRNAHNLLVSGSADTTLKLWDLSTCNCVKSFTYHSDKVSCL 303
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 539 HVCEQRITSYINGTPKPMSALLWYNKQ 459
H C + +++G P P AL Y KQ
Sbjct: 100 HKCSKEFDPFLHGIPIPQKALNIYEKQ 126
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 507 YIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYL 608
Y AS + T M+ + + +QAG F+ G +V L
Sbjct: 300 YQASVPIYTSMLYNYSSFQAGNFLSLAGIINVPL 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,540,126
Number of Sequences: 5004
Number of extensions: 75132
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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