Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0902
(821 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 138 7e-33
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796... 131 6e-31
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 29 3.4
06_01_0041 + 403634-403817,404154-404332,404431-404536,404620-40... 29 3.4
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 5.9
04_04_0589 + 26449184-26450500,26452220-26452310,26452428-264525... 29 5.9
07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188 28 7.8
06_02_0008 - 10552066-10552116,10552224-10552323,10552394-105524... 28 7.8
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162 28 7.8
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 138 bits (333), Expect = 7e-33
Identities = 60/83 (72%), Positives = 67/83 (80%)
Frame = +1
Query: 259 GAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFY 438
GA+Y D DYTG+G DQL VID IKNNP DRR+++ AWN SDLKKMALPPCH AQFY
Sbjct: 360 GAEYTDMHADYTGKGFDQLMDVIDKIKNNPDDRRIILSAWNPSDLKKMALPPCHMFAQFY 419
Query: 439 VADGKLSCLLYQRSADMGLGVPF 507
V G+LSC +YQRSADMGLGVPF
Sbjct: 420 VESGELSCQMYQRSADMGLGVPF 442
Score = 116 bits (278), Expect = 3e-26
Identities = 55/92 (59%), Positives = 65/92 (70%), Gaps = 9/92 (9%)
Frame = +2
Query: 5 FGAMQRYSLHNNTLPLLTTKR---------VFTRGVIEELLWMISGSTDSKALAAKGVHI 157
FG R++L N+ PLLTTK+ VF RGV+EELLW ISGST +K L KG+HI
Sbjct: 267 FGCQMRFNLRNS-FPLLTTKKLAPLKLYNKVFWRGVVEELLWFISGSTSAKVLQEKGIHI 325
Query: 158 WDANGSRNFLDNLGFTDREEGDLGPVYGFQWR 253
WD N SR +LD++G REEGDLGPVYGFQWR
Sbjct: 326 WDGNASREYLDSVGLAHREEGDLGPVYGFQWR 357
Score = 96.3 bits (229), Expect = 3e-20
Identities = 46/91 (50%), Positives = 56/91 (61%)
Frame = +3
Query: 489 GLRSSIYIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTL 668
GL IASYSLLT+MIAHV G GEF+H GD HVY H+ L+ Q+Q+ PK FP L
Sbjct: 437 GLGVPFNIASYSLLTYMIAHVCGLSPGEFVHVIGDAHVYRTHVRALEEQIQKLPKPFPVL 496
Query: 669 EFARKIESIDDFKYEDFIIKDYKPHPKIEME 761
+ + ID F DF + Y PH KIEM+
Sbjct: 497 KINPLKKDIDSFVASDFKLVGYDPHQKIEMK 527
>12_02_0191 +
15178717-15179045,15179147-15179546,15179624-15179668,
15180506-15180571,15181829-15181890,15182161-15182326,
15183384-15183507,15184177-15184283,15184395-15184505
Length = 469
Score = 131 bits (317), Expect = 6e-31
Identities = 56/81 (69%), Positives = 65/81 (80%)
Frame = +1
Query: 265 KYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFYVA 444
+Y D DY G+G DQL VID IKNNP DRR+++ AWN +DLKKMALPPCH AQFYV
Sbjct: 301 RYTDMHADYVGKGFDQLMDVIDKIKNNPDDRRIILSAWNPTDLKKMALPPCHMFAQFYVE 360
Query: 445 DGKLSCLLYQRSADMGLGVPF 507
+G+LSC +YQRSADMGLGVPF
Sbjct: 361 NGELSCQMYQRSADMGLGVPF 381
Score = 90.2 bits (214), Expect = 2e-18
Identities = 43/75 (57%), Positives = 52/75 (69%)
Frame = +2
Query: 5 FGAMQRYSLHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNF 184
FG R++L N PLLTTKRVF RGV+EELLW ISGST++K L KG+HIWD N SR +
Sbjct: 240 FGCQMRFNLRRN-FPLLTTKRVFWRGVLEELLWFISGSTNAKVLQEKGIHIWDGNASRQY 298
Query: 185 LDNLGFTDREEGDLG 229
LD +TD +G
Sbjct: 299 LDR--YTDMHADYVG 311
Score = 88.2 bits (209), Expect = 7e-18
Identities = 43/91 (47%), Positives = 55/91 (60%)
Frame = +3
Query: 489 GLRSSIYIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTL 668
GL IASYSLLT MIA V G+F+H GD HVY H+E L+ Q++++PK FP L
Sbjct: 376 GLGVPFNIASYSLLTCMIAQVCDLSPGDFVHVIGDAHVYRTHVEALEEQMRKQPKPFPIL 435
Query: 669 EFARKIESIDDFKYEDFIIKDYKPHPKIEME 761
+ + ID F DF + Y PH KIEM+
Sbjct: 436 KINPVKKDIDSFVTSDFKLVRYDPHHKIEMK 466
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 53 LTTKRVFT-RGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLG 229
LT +++T G++E + + GS D A G HI G + ++++ D ++
Sbjct: 526 LTEYQIYTLHGILENAPYNLHGSNDFAVGAVDGTHIPVTVGVDSAIEHMNRHDETTKNVL 585
Query: 230 PVYGFQWRLV 259
+ GF R++
Sbjct: 586 TIVGFDGRVI 595
>06_01_0041 +
403634-403817,404154-404332,404431-404536,404620-404936,
405231-405605,406199-406283,406570-408066,408575-408738
Length = 968
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 47 PLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRN 181
P+ T K + LL +++ STD+K ++ G+HI ++ S N
Sbjct: 535 PIATQKVAVDNHASQHLLSLLTKSTDNKGSSSFGLHIGSSDRSHN 579
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 101 WMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTDREEGDLGPVYGFQWRLV 259
W G+T + ++ + A RN L+ LG T R + D+G + F + L+
Sbjct: 51 WCACGTTSTPIWRSRSGNTTPAPLVRNELERLGLTTRMDTDIGIIIDFGFSLL 103
>04_04_0589 +
26449184-26450500,26452220-26452310,26452428-26452585,
26452670-26452768,26453296-26453345,26453654-26453705,
26453773-26454058,26454286-26454400,26454938-26455020,
26455381-26455466
Length = 778
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 581 VYKFSSLVTSYMSNHVCEQRITSYINGTPKPMSAL 477
V++ S L N VC Q + NG+P+P+ AL
Sbjct: 344 VWEVSELERKREGNGVCNQLVAVVCNGSPEPILAL 378
>07_03_1435 - 26532302-26533159,26533559-26534902,26535180-26535188
Length = 736
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 262 AKYIDCQTDYTGQGIDQLQSVIDSIKNNPA 351
A+ D Y G+ +DQLQSV+ S++ P+
Sbjct: 566 AQVFDRLRPYAGKWVDQLQSVLWSLRTTPS 595
>06_02_0008 -
10552066-10552116,10552224-10552323,10552394-10552449,
10553950-10557180
Length = 1145
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 453 IILLVVPKKC*HGLRSSIYIASYSLLTHMIAHVTGYQAGEF 575
IILLV + C HG++S Y L+ ++ + Y AG F
Sbjct: 850 IILLVNRESCEHGIKS--YALRVCLIAGLLGLLIAYSAGSF 888
>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
Length = 708
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +1
Query: 280 QTDYTGQGI--DQLQSVIDSIK-NNPADRRMLICA-----WNSSDLKKMALPPCHCLAQF 435
+ Y G+G+ D+L + ++ NPA I A W S L M + C +A F
Sbjct: 411 EVGYDGEGLENDRLDQATELLEYENPAAAAKAIVAMVKSLWPSIKLHLMEILACFSVAAF 470
Query: 436 YVADGKLSCLLYQRS 480
+A L C +QRS
Sbjct: 471 AIAAAMLKC--FQRS 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,619,136
Number of Sequences: 37544
Number of extensions: 443841
Number of successful extensions: 1043
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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