Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0902
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15236| Best HMM Match : Thymidylat_synt (HMM E-Value=0)            139   2e-33
SB_52147| Best HMM Match : EGF (HMM E-Value=0)                         31   1.5  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         29   3.4  
SB_32114| Best HMM Match : PAN (HMM E-Value=0.11)                      29   4.6  
SB_55987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_5093| Best HMM Match : HC2 (HMM E-Value=6.9)                        28   8.0  

>SB_15236| Best HMM Match : Thymidylat_synt (HMM E-Value=0)
          Length = 300

 Score =  139 bits (337), Expect = 2e-33
 Identities = 60/83 (72%), Positives = 68/83 (81%)
 Frame = +1

Query: 259 GAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFY 438
           GAKY+D  TDYTGQG+DQL  VID IKNNP DRR+++ AWN SD+  MALPPCH   QFY
Sbjct: 154 GAKYVDMHTDYTGQGVDQLAQVIDKIKNNPDDRRIIMLAWNPSDIPLMALPPCHAFVQFY 213

Query: 439 VADGKLSCLLYQRSADMGLGVPF 507
           VA+G+LSC LYQRS DMGLGVPF
Sbjct: 214 VANGELSCQLYQRSGDMGLGVPF 236



 Score =  132 bits (318), Expect = 4e-31
 Identities = 57/84 (67%), Positives = 65/84 (77%)
 Frame = +2

Query: 2   IFGAMQRYSLHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRN 181
           +FGA  R+SL +   PLLTTKRVF RGV EELLW + G T++K LA K +HIWDANGSR 
Sbjct: 68  VFGAQMRFSLRDGVFPLLTTKRVFWRGVAEELLWFVKGCTNAKVLADKNIHIWDANGSRG 127

Query: 182 FLDNLGFTDREEGDLGPVYGFQWR 253
           FLD  G + REEGDLGPVYGFQWR
Sbjct: 128 FLDRQGLSHREEGDLGPVYGFQWR 151



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 39/91 (42%), Positives = 51/91 (56%)
 Frame = +3

Query: 489 GLRSSIYIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTL 668
           GL     IASYSLLT+MIAHV G                        ++L+REP+ FP+L
Sbjct: 231 GLGVPFNIASYSLLTYMIAHVCG------------------------LKLKREPRAFPSL 266

Query: 669 EFARKIESIDDFKYEDFIIKDYKPHPKIEME 761
              R+++ ID F ++DF I  YKPHPKI+ME
Sbjct: 267 VIKRQVDDIDQFTFDDFEIVGYKPHPKIKME 297


>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
          Length = 364

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 247 METSGAKYIDCQTDYTGQGIDQLQSVIDSIKNNP 348
           ++ +G+ Y +C T YTGQ  D   ++ID+ ++NP
Sbjct: 185 IQQTGSFYCECLTGYTGQSCD---TMIDACQSNP 215


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 606 LNHIEPLKIQLQREPKQFPTLEFARKIESIDDFKYEDFIIKDYKPH 743
           LN I  L+IQL++  K    LE+  + + +     ED +IK  + H
Sbjct: 270 LNKISQLEIQLEKVGKSKAQLEYQHQQQVLKTTSLEDELIKSQRAH 315


>SB_32114| Best HMM Match : PAN (HMM E-Value=0.11)
          Length = 390

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 776 YTILPFHFNFRMWFVIFNNEVLIFEIINGFNFSSKF*C 663
           + ++PF F+  M+F  F ++ L   II+ F+  S F C
Sbjct: 126 FIVVPFDFSLSMYFKGFRHKFLEGPIISEFSVQSDFEC 163


>SB_55987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 43

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 679 EKLNPLMISNMRTSLLKITNHILKLKWKGSIVYLVPLL 792
           EKLN + +  + T L KI    L L+W+  +  L  +L
Sbjct: 5   EKLNAIFVKEIATKLSKIAITTLDLRWRNCVDILWTIL 42


>SB_5093| Best HMM Match : HC2 (HMM E-Value=6.9)
          Length = 400

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 29  LHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLGFTD 208
           L NN   L+T   + TRG +   +W+  GS  +K +A KG+        +   +N G  D
Sbjct: 233 LFNNEGALITNVWL-TRGSLITKVWLTRGSVITKRVADKGLFNNKRVADKGLFNNEGVAD 291

Query: 209 R 211
           +
Sbjct: 292 K 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,727,358
Number of Sequences: 59808
Number of extensions: 528879
Number of successful extensions: 1239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)