Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0902
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099673-1|AAC97508.1| 315|Caenorhabditis elegans thymidylate s... 136 2e-32
AC006708-20|AAF60422.1| 312|Caenorhabditis elegans Hypothetical... 136 2e-32
AC006696-2|ABQ13058.1| 129|Caenorhabditis elegans Hypothetical ... 31 0.75
AC006696-1|AAF39991.1| 151|Caenorhabditis elegans Hypothetical ... 31 0.75
U50068-7|AAB37735.1| 479|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 30 2.3
U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical p... 28 7.0
AF143149-1|AAD37915.1| 260|Caenorhabditis elegans R151.8B prote... 28 7.0
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 28 9.3
AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin ... 28 9.3
>AF099673-1|AAC97508.1| 315|Caenorhabditis elegans thymidylate
synthase protein.
Length = 315
Score = 136 bits (328), Expect = 2e-32
Identities = 60/84 (71%), Positives = 66/84 (78%)
Frame = +2
Query: 2 IFGAMQRYSLHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRN 181
IFG +Y L N T+PLLTTKRV+ +GV+EELLW ISGSTD K L K V IW+ NG R
Sbjct: 59 IFGMQSKYCLRNGTIPLLTTKRVYWKGVLEELLWFISGSTDGKLLMEKNVKIWEKNGDRA 118
Query: 182 FLDNLGFTDREEGDLGPVYGFQWR 253
FLDNLGFT REEGDLGPVYGFQWR
Sbjct: 119 FLDNLGFTSREEGDLGPVYGFQWR 142
Score = 129 bits (312), Expect = 2e-30
Identities = 55/83 (66%), Positives = 65/83 (78%)
Frame = +1
Query: 259 GAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFY 438
GAKY+DC TDY+GQG+DQL VI IK P RR+++ AWN SDL +M LPPCH + QFY
Sbjct: 145 GAKYVDCHTDYSGQGVDQLAEVIRQIKEQPDSRRIIMSAWNPSDLGQMVLPPCHTMCQFY 204
Query: 439 VADGKLSCLLYQRSADMGLGVPF 507
V +G+LSC LYQRS DMGLGVPF
Sbjct: 205 VDNGELSCQLYQRSGDMGLGVPF 227
Score = 107 bits (257), Expect = 9e-24
Identities = 49/91 (53%), Positives = 59/91 (64%)
Frame = +3
Query: 489 GLRSSIYIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTL 668
GL +ASY LLTHMIA V G + G +HT GD HVY NH++ LKIQL REP FP +
Sbjct: 222 GLGVPFNLASYGLLTHMIAKVCGLKPGTLVHTLGDAHVYSNHVDALKIQLDREPYAFPKI 281
Query: 669 EFARKIESIDDFKYEDFIIKDYKPHPKIEME 761
F R + SIDDF + + DYK HPKI M+
Sbjct: 282 RFTRDVASIDDFTSDMIALDDYKCHPKIPMD 312
>AC006708-20|AAF60422.1| 312|Caenorhabditis elegans Hypothetical
protein Y110A7A.4 protein.
Length = 312
Score = 136 bits (328), Expect = 2e-32
Identities = 60/84 (71%), Positives = 66/84 (78%)
Frame = +2
Query: 2 IFGAMQRYSLHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRN 181
IFG +Y L N T+PLLTTKRV+ +GV+EELLW ISGSTD K L K V IW+ NG R
Sbjct: 56 IFGMQSKYCLRNGTIPLLTTKRVYWKGVLEELLWFISGSTDGKLLMEKNVKIWEKNGDRA 115
Query: 182 FLDNLGFTDREEGDLGPVYGFQWR 253
FLDNLGFT REEGDLGPVYGFQWR
Sbjct: 116 FLDNLGFTSREEGDLGPVYGFQWR 139
Score = 129 bits (312), Expect = 2e-30
Identities = 55/83 (66%), Positives = 65/83 (78%)
Frame = +1
Query: 259 GAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFY 438
GAKY+DC TDY+GQG+DQL VI IK P RR+++ AWN SDL +M LPPCH + QFY
Sbjct: 142 GAKYVDCHTDYSGQGVDQLAEVIRQIKEQPDSRRIIMSAWNPSDLGQMVLPPCHTMCQFY 201
Query: 439 VADGKLSCLLYQRSADMGLGVPF 507
V +G+LSC LYQRS DMGLGVPF
Sbjct: 202 VDNGELSCQLYQRSGDMGLGVPF 224
Score = 107 bits (257), Expect = 9e-24
Identities = 49/91 (53%), Positives = 59/91 (64%)
Frame = +3
Query: 489 GLRSSIYIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTL 668
GL +ASY LLTHMIA V G + G +HT GD HVY NH++ LKIQL REP FP +
Sbjct: 219 GLGVPFNLASYGLLTHMIAKVCGLKPGTLVHTLGDAHVYSNHVDALKIQLDREPYAFPKI 278
Query: 669 EFARKIESIDDFKYEDFIIKDYKPHPKIEME 761
F R + SIDDF + + DYK HPKI M+
Sbjct: 279 RFTRDVASIDDFTSDMIALDDYKCHPKIPMD 309
>AC006696-2|ABQ13058.1| 129|Caenorhabditis elegans Hypothetical
protein W08E12.8b protein.
Length = 129
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 234 TGPRSPSSLSVNPKLSRKFLDPFASQMCTPLAANAFE 124
T S S LS+N LS F P A Q+ PLA N F+
Sbjct: 37 TPSSSASPLSINQLLSSSFSQPPAPQLPVPLAFNPFQ 73
>AC006696-1|AAF39991.1| 151|Caenorhabditis elegans Hypothetical
protein W08E12.8a protein.
Length = 151
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 234 TGPRSPSSLSVNPKLSRKFLDPFASQMCTPLAANAFE 124
T S S LS+N LS F P A Q+ PLA N F+
Sbjct: 59 TPSSSASPLSINQLLSSSFSQPPAPQLPVPLAFNPFQ 95
>U50068-7|AAB37735.1| 479|Caenorhabditis elegans Hypothetical
protein C01G5.3 protein.
Length = 479
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 576 IHTTGDTHVYLNHIEPLKIQLQREPKQF-PTLEFARKIESI 695
+HT +T + LN I+PL ++R+ F P L F+ I S+
Sbjct: 258 LHTIKNTKLVLNEIQPLSEMMKRDDIHFTPELVFSNTIRSL 298
>AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical
protein T24C4.2 protein.
Length = 423
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -3
Query: 219 PSSLSVNPKLSRKFLDPFASQMCTPLAANAFESVDPEIIHSSSSITPL 76
P+S S+ P + FL P SQ+ L+++ E+ P+I HS ++ P+
Sbjct: 309 PAS-SLVPTPAPPFLTPTPSQVSPALSSSVDENEAPKIFHSLEAVRPI 355
>U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical
protein R151.8 protein.
Length = 731
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 222 SPSSLSVNPKLSRKFLDPFASQMCTPLAANAFESVDPEIIHSSSSITP 79
SP+ S +P+L RK D F S + TP +S+ + S++P
Sbjct: 601 SPTKRSADPELQRKRNDAFLSSLRTPDPTPKKDSIMQQYFGGDLSMSP 648
>AF143149-1|AAD37915.1| 260|Caenorhabditis elegans R151.8B protein
protein.
Length = 260
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 222 SPSSLSVNPKLSRKFLDPFASQMCTPLAANAFESVDPEIIHSSSSITP 79
SP+ S +P+L RK D F S + TP +S+ + S++P
Sbjct: 130 SPTKRSADPELQRKRNDAFLSSLRTPDPTPKKDSIMQQYFGGDLSMSP 177
>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
protein T24A11.1b protein.
Length = 1006
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 6 LERCRGTLFTITRFHFSQLNEYLQEVL*KNYCG 104
+E+C+GTL I RF EY+ + ++Y G
Sbjct: 579 MEKCKGTLVDIWRFIGPHNEEYVNQSFDEHYTG 611
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 6 LERCRGTLFTITRFHFSQLNEYLQEVL*KNYCG 104
+E+C+GTL I RF EY+ + ++Y G
Sbjct: 575 MEKCKGTLVDIWRFIGPHNEEYVNQSFDEHYTG 607
>AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin
homologous protein 1 protein.
Length = 930
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 6 LERCRGTLFTITRFHFSQLNEYLQEVL*KNYCG 104
+E+C+GTL I RF EY+ + ++Y G
Sbjct: 579 MEKCKGTLVDIWRFIGPHNEEYVNQSFDEHYTG 611
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,330,415
Number of Sequences: 27780
Number of extensions: 412394
Number of successful extensions: 988
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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