Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0902
         (821 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    28   0.091
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.0  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    22   6.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 28.3 bits (60), Expect = 0.091
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 539 DCSCNWLPSWRIYTHNRRYPRV 604
           +CS +WLP     T  R YPR+
Sbjct: 685 NCSMDWLPGINNQTSTREYPRI 706


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 94  FFYNTSCKYSFSCEKWKRVIVKRVPLHR 11
           +F NT C +  +   WK  +   + LH+
Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSLHK 560


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 429 TILCG*WEIILLVVPKKC 482
           T+L   + +ILL++P KC
Sbjct: 13  TVLLFSFVVILLIIPSKC 30


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +1

Query: 706 NMRTSLLKITNHILKL----KWKGSIVYLVPLLK 795
           NM +  ++I N I  +     W G + +LVP+L+
Sbjct: 271 NMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQ 304


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +1

Query: 706 NMRTSLLKITNHILKL----KWKGSIVYLVPLLK 795
           NM +  ++I N I  +     W G + +LVP+L+
Sbjct: 239 NMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQ 272


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 429 TILCG*WEIILLVVPKKC 482
           T+L   + +ILL++P KC
Sbjct: 13  TVLLFSFVVILLIIPSKC 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,002
Number of Sequences: 438
Number of extensions: 5846
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26217432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)