BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0902 (821 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 28 0.091 AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 24 2.0 M12598-1|AAA27733.1| 77|Apis mellifera protein ( Bee preprosec... 22 6.0 AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 6.0 AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 6.0 AY082691-1|AAL92482.1| 77|Apis mellifera preprosecapin protein. 22 6.0 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 28.3 bits (60), Expect = 0.091 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +2 Query: 539 DCSCNWLPSWRIYTHNRRYPRV 604 +CS +WLP T R YPR+ Sbjct: 685 NCSMDWLPGINNQTSTREYPRI 706 >AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. Length = 735 Score = 23.8 bits (49), Expect = 2.0 Identities = 8/28 (28%), Positives = 14/28 (50%) Frame = -2 Query: 94 FFYNTSCKYSFSCEKWKRVIVKRVPLHR 11 +F NT C + + WK + + LH+ Sbjct: 533 WFQNTFCYFRRNAATWKNAVRHNLSLHK 560 >M12598-1|AAA27733.1| 77|Apis mellifera protein ( Bee preprosecapin mRNA, complete cds. ). Length = 77 Score = 22.2 bits (45), Expect = 6.0 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +3 Query: 429 TILCG*WEIILLVVPKKC 482 T+L + +ILL++P KC Sbjct: 13 TVLLFSFVVILLIIPSKC 30 >AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-activated ion channelvariant L protein. Length = 664 Score = 22.2 bits (45), Expect = 6.0 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +1 Query: 706 NMRTSLLKITNHILKL----KWKGSIVYLVPLLK 795 NM + ++I N I + W G + +LVP+L+ Sbjct: 271 NMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQ 304 >AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-activated ion channel protein. Length = 632 Score = 22.2 bits (45), Expect = 6.0 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%) Frame = +1 Query: 706 NMRTSLLKITNHILKL----KWKGSIVYLVPLLK 795 NM + ++I N I + W G + +LVP+L+ Sbjct: 239 NMASVFMRIFNLICMMLLIGHWSGCLQFLVPMLQ 272 >AY082691-1|AAL92482.1| 77|Apis mellifera preprosecapin protein. Length = 77 Score = 22.2 bits (45), Expect = 6.0 Identities = 8/18 (44%), Positives = 13/18 (72%) Frame = +3 Query: 429 TILCG*WEIILLVVPKKC 482 T+L + +ILL++P KC Sbjct: 13 TVLLFSFVVILLIIPSKC 30 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 239,002 Number of Sequences: 438 Number of extensions: 5846 Number of successful extensions: 8 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8 length of database: 146,343 effective HSP length: 57 effective length of database: 121,377 effective search space used: 26217432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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