Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0902
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16370.1 68415.m01873 bifunctional dihydrofolate reductase-th...   140   1e-33
At4g34570.1 68417.m04912 bifunctional dihydrofolate reductase-th...   137   7e-33
At2g21550.1 68415.m02565 bifunctional dihydrofolate reductase-th...    81   9e-16
At3g29035.1 68416.m03632 no apical meristem (NAM) family protein...    28   8.6  
At1g68290.1 68414.m07801 bifunctional nuclease, putative similar...    28   8.6  

>At2g16370.1 68415.m01873 bifunctional dihydrofolate
           reductase-thymidylate synthase 1 / DHFR-TS (THY-1)
           identical to GP:289193:L08593 [SP|Q05762]
          Length = 519

 Score =  140 bits (338), Expect = 1e-33
 Identities = 62/83 (74%), Positives = 68/83 (81%)
 Frame = +1

Query: 259 GAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFY 438
           GAKY D   DYTGQG DQL  VID IKNNP DRR+++ AWN SDLK MALPPCH  AQFY
Sbjct: 349 GAKYTDMHADYTGQGFDQLVDVIDKIKNNPDDRRIIMSAWNPSDLKLMALPPCHMFAQFY 408

Query: 439 VADGKLSCLLYQRSADMGLGVPF 507
           VA+G+LSC +YQRSADMGLGVPF
Sbjct: 409 VAEGELSCQMYQRSADMGLGVPF 431



 Score =  128 bits (308), Expect = 6e-30
 Identities = 55/83 (66%), Positives = 66/83 (79%)
 Frame = +2

Query: 5   FGAMQRYSLHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNF 184
           FG   +++L  +  PLLTTKRVF RGV+EELLW ISGST++K L  KG+HIWD N SR +
Sbjct: 265 FGCQMKFNLRRS-FPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREY 323

Query: 185 LDNLGFTDREEGDLGPVYGFQWR 253
           LD +G T+REEGDLGPVYGFQWR
Sbjct: 324 LDGIGLTEREEGDLGPVYGFQWR 346



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 44/91 (48%), Positives = 54/91 (59%)
 Frame = +3

Query: 489 GLRSSIYIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTL 668
           GL     IASYSLLT M+AHV     G+FIH  GD HVY  H+ PL+ QL   PK FP +
Sbjct: 426 GLGVPFNIASYSLLTCMLAHVCDLVPGDFIHVLGDAHVYKTHVRPLQEQLLNLPKPFPVM 485

Query: 669 EFARKIESIDDFKYEDFIIKDYKPHPKIEME 761
           +   + + ID F   DF +  Y PH KIEM+
Sbjct: 486 KINPEKKQIDSFVASDFDLTGYDPHKKIEMK 516


>At4g34570.1 68417.m04912 bifunctional dihydrofolate
           reductase-thymidylate synthase 2 / DHFR-TS (THY-2)
           identical to SP|Q05763
          Length = 565

 Score =  137 bits (332), Expect = 7e-33
 Identities = 61/83 (73%), Positives = 68/83 (81%)
 Frame = +1

Query: 259 GAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFY 438
           GAKY D   DYTGQG DQL  VI+ IKNNP DRR+++ AWN SDLK MALPPCH  AQFY
Sbjct: 395 GAKYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIIMSAWNPSDLKLMALPPCHMFAQFY 454

Query: 439 VADGKLSCLLYQRSADMGLGVPF 507
           VA+G+LSC +YQRSADMGLGVPF
Sbjct: 455 VANGELSCQMYQRSADMGLGVPF 477



 Score =  126 bits (303), Expect = 2e-29
 Identities = 55/83 (66%), Positives = 65/83 (78%)
 Frame = +2

Query: 5   FGAMQRYSLHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNF 184
           FG   +++L  N  PLLTTKRVF RGV+EELLW ISGST++K L  KG+ IWD N SR +
Sbjct: 311 FGCQMKFNLRRN-FPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIRIWDGNASRAY 369

Query: 185 LDNLGFTDREEGDLGPVYGFQWR 253
           LD +G T+REEGDLGPVYGFQWR
Sbjct: 370 LDGIGLTEREEGDLGPVYGFQWR 392



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/91 (48%), Positives = 57/91 (62%)
 Frame = +3

Query: 489 GLRSSIYIASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTL 668
           GL     IASYSLLT ++AHV     G+FIH  GD HVY NH+ PL+ QL+  PK FP L
Sbjct: 472 GLGVPFNIASYSLLTCILAHVCDLVPGDFIHVIGDAHVYKNHVRPLQEQLENPPKPFPVL 531

Query: 669 EFARKIESIDDFKYEDFIIKDYKPHPKIEME 761
           +   + + ID F  +DF +  Y PH KI+M+
Sbjct: 532 KINPEKKDIDSFVADDFELIGYDPHKKIDMK 562


>At2g21550.1 68415.m02565 bifunctional dihydrofolate
           reductase-thymidylate synthase, putative / DHFR-TS,
           putative similar to THY-1 [SP| Q05762] and THY-2
           [SP|Q05763] from Arabidopsis thaliana; contains Pfam
           profiles PF00303 thymidylate synthase and PF00186
           dihydrofolate reductase
          Length = 492

 Score = 81.0 bits (191), Expect = 9e-16
 Identities = 35/83 (42%), Positives = 52/83 (62%)
 Frame = +1

Query: 259 GAKYIDCQTDYTGQGIDQLQSVIDSIKNNPADRRMLICAWNSSDLKKMALPPCHCLAQFY 438
           G  +  C   +  Q   QL  VI+ IKNNP D+R+++ A N  D K +++ PCH   QFY
Sbjct: 335 GLHWKHCDARFVIQEFSQLSDVINKIKNNPHDQRIMLAACNPLDFK-LSVSPCHTFTQFY 393

Query: 439 VADGKLSCLLYQRSADMGLGVPF 507
           VA+G++SC +YQ S +  +G+PF
Sbjct: 394 VANGEVSCQIYQSSTEASIGIPF 416



 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = +2

Query: 5   FGAMQRYSLHNNTLPLLTTKRVFTRGVIEELLWMISGSTDSKALAAKGVHIWDANGSRNF 184
           FG   R++L   T PLLTTK++F  GV+EE+L +ISGS + K     G HIWD + ++ +
Sbjct: 260 FGCQMRFNLRK-TFPLLTTKKIFWLGVVEEILQLISGSNNPK---ENGSHIWDTDEAKEY 315

Query: 185 LDNLGFTDREE-GDLGPVYGFQWR 253
           LD+ G    EE GD   ++G  W+
Sbjct: 316 LDSFGVNATEEDGDNPFLHGLHWK 339



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/69 (42%), Positives = 44/69 (63%)
 Frame = +3

Query: 510 IASYSLLTHMIAHVTGYQAGEFIHTTGDTHVYLNHIEPLKIQLQREPKQFPTLEFARKIE 689
           IA+YSLLT +IAHV    AG+FIH  G  ++   H++ ++ QLQ  PK FP L+   + +
Sbjct: 418 IATYSLLTCIIAHVCDLGAGDFIHVIGQAYINKAHVKAIQKQLQISPKPFPILKINPEKK 477

Query: 690 SIDDFKYED 716
            +D+F+  D
Sbjct: 478 KMDNFEASD 486


>At3g29035.1 68416.m03632 no apical meristem (NAM) family protein
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to cup-shaped cotyledon CUC2
           (GI:1944132) [Arabidopsis thaliana]
          Length = 318

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 80  GVIEELLWMISGSTDSKALAAKGVHIWDANGSRNFLDNLG 199
           G++  + +    +TD K+L A        +GS NFL N+G
Sbjct: 212 GLLSHVTYFSDQTTDDKSLVADFKTTMFGSGSTNFLPNIG 251


>At1g68290.1 68414.m07801 bifunctional nuclease, putative similar to
           bifunctional nuclease [Zinnia elegans]
           gi|4099833|gb|AAD00694
          Length = 290

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 649 GSLCS-CIFNGSI*FRYTWVSPVVCINSP 566
           G L S C++   + FRY W SP+  IN+P
Sbjct: 62  GDLSSLCLWADRVKFRYHWSSPLHYINTP 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,032,935
Number of Sequences: 28952
Number of extensions: 377600
Number of successful extensions: 992
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)