Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0901
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc...    27   2.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.1  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   6.5  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.6  

>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
           Arg3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 612 RCHQRNNLQ*AGSARIVSSGSARDQAAVSGASGSCLDGGGQDLGRVDEQRGLPRRCVD 439
           R  Q + L     A I S  S R + +V  A  SCL G    LG+ D Q G+     D
Sbjct: 43  RSVQMSGLSSQNVAMIFSKRSTRTRVSVESAV-SCLGGNAMFLGKDDIQLGVNESLYD 99


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 277 RSRPSLWC-FRVVTHGASVGESVRFLVLSY*RRERELRIAYVHFVR 143
           + +P  W  + ++    SV ES       Y +R R+ RIAY+H +R
Sbjct: 328 KEKPLEWFKYAILVVKDSVHESRYHWTWKYFKRRRDDRIAYMHIIR 373


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 274 FCRGTIIGVRVDLWNGTLEFYVNREPQGIAFYNLRRHQVLFPMI 405
           F  G IIG  V+  N T+ +  N    G+AF  +    VL+P+I
Sbjct: 174 FTTGDIIGCGVNFINRTIFYTKNGAYLGVAFKKV--SDVLYPVI 215


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 480  RVDEQRGLPRRCVDQLHARLGRGRAD 403
            +V+E+  +P+RC+  +  R+G  R D
Sbjct: 1038 QVEEKIEVPQRCISSIIGRMGSTRRD 1063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,371
Number of Sequences: 5004
Number of extensions: 55488
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)