Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0901
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508... 32 0.55
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 29 2.9
05_06_0259 + 26733699-26733854,26733940-26734071,26734171-267343... 29 3.9
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 29 3.9
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 29 3.9
01_06_0355 + 28657833-28660665,28660762-28661126 29 3.9
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 29 5.1
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665... 28 6.8
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 28 6.8
10_02_0050 - 4596444-4596634,4596855-4597107 28 6.8
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389... 28 9.0
09_01_0111 + 1727021-1727206,1727324-1727373,1727440-1727491,172... 28 9.0
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 28 9.0
>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
16552038-16552076,16553151-16553272,16553531-16553677,
16554097-16554186,16554274-16554398,16554567-16554772,
16554951-16555075,16555528-16555722,16556295-16556337,
16556762-16557267,16558198-16558570,16559772-16560062,
16560132-16561101,16561196-16561892,16562378-16562658,
16562731-16563400,16563860-16564034,16565103-16565659
Length = 2204
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = -2
Query: 504 DGGGQDLGRVDEQRGLPRRCVDQLHARLGRGRADHREQDLVTTEIVERYTLRLTVDVKLQ 325
+GGG + EQ+ RC D + A L + R T E+ ++ L + + V
Sbjct: 1969 EGGGGSKAQPSEQKAAAARCADDVRALLFGMMLEQRACSRATVEMEQQRLLLVALPVGFA 2028
Query: 324 RSVPQVDPDSDDGAATEADRVSGALEL 244
+P + P+ + A + V +EL
Sbjct: 2029 SHMPTMPPNPVETAPGQWRGVVVEMEL 2055
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 564 VSSGSARDQAAVSGASGSCLDGGGQDLGRVDEQRGL 457
V S AR AA G+SG C + LG D+Q L
Sbjct: 57 VGSAEARSAAAAEGSSGRCSEQEHAKLGERDQQEWL 92
>05_06_0259 +
26733699-26733854,26733940-26734071,26734171-26734341,
26734419-26734445,26734550-26734757,26735160-26735241,
26735384-26735492,26735640-26735756,26735828-26736160
Length = 444
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 10/118 (8%)
Frame = +1
Query: 184 VSNRTGRGI-VRTLLHWRRASQL*STRDSVGFCRGTIIGVRVDLWNGTLEFYVNREPQGI 360
+S G GI + +L R ++ + R T GVR+ W G + + N +GI
Sbjct: 250 ISCGPGHGISIGSLGKNRTTDRIENVRVDTCLLTNTTNGVRIKSWQGGMGYAHNLRFEGI 309
Query: 361 AFYNLRRHQVL--------FPMISSTAAQSSMKL-IYAASWQASLLVDSAKILAASVK 507
N+ ++ P + + + SS+KL +++ W + V+ KI A ++
Sbjct: 310 VMKNVSNPIIIDQYYCDQPTPCANQSTSSSSLKLGNFSSLWMQTQAVEVRKIEFAGIR 367
>05_05_0334 +
24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -2
Query: 555 GSARDQAAVSGASGSCLDGGGQDLGRVDEQRGLPRRCVDQLHARLGRGRADHREQDLVTT 376
G AR + +G S S L G VDE L ++ +++ A G R + E +
Sbjct: 213 GKARPRRPAAGVSSSALQEAHDIFGDVDELLALRKQELERDAANSGELRGNRLEDEFEPF 272
Query: 375 EIVERY 358
+ E+Y
Sbjct: 273 ILAEKY 278
>01_06_1320 +
36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 411 DRGPVEHEADLRSVVAGLAARRLGQDPGRLRQDRSLMRPKLPP 539
D G +E E D G ARR G+D G ++ ++ R P
Sbjct: 9 DEGELEDELDALLGTGGAGARRRGEDAGERERELNMFRSGSAP 51
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 68 HNYHYYWEIKMLTDTYGTDILIGVGS-NKV---NISDPQFTFTSLIGQDEESYGLSY 226
H Y+E+ T+ + +D L+G GS KV N+ D Q ++ D E +S+
Sbjct: 759 HRAISYYELVRATNNFNSDHLLGAGSFGKVFKGNLDDEQIVAIKVLNMDMERATMSF 815
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 26 SSGTAVVRGNCPMIHNYH-YYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQD 202
+ G + N H +H +Y K L +GT +L G NK++ D F +I D
Sbjct: 173 NGGLEIKHDNDAGKHFFHQHYGSTKPLISFFGTKLLSDKGVNKLSEDDVLRCFMVIIYLD 232
Query: 203 EESYGL 220
+ +G+
Sbjct: 233 FKDFGI 238
>12_02_0944 -
24666114-24666200,24666287-24666352,24666450-24666515,
24666607-24666825,24666927-24667403
Length = 304
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = +3
Query: 417 GPVEHEADLRSVVAGLAARRL---GQDPGRLRQDRSLMR--PKLPPGLWQTLRRQFWLTL 581
G + HE DL SV +G R+ G+ G+ R + + PK QT+ + + +
Sbjct: 130 GELGHE-DLDSV-SGTNKRKQSAEGEFDGQTRGSKCARKAEPKRAKKAKQTVEKDASVAI 187
Query: 582 PTEGCFVDDTDVDIELEAAKAMPLSSGMKR 671
P C + D D E A A S G R
Sbjct: 188 PNGSCSISDNDSSSSQEVADAGATSKGKSR 217
>10_08_0765 -
20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 167 DRLCSLCSSRHL*EYQYHMYQLTF*FPNNN 78
+RLC++ +HL E QY M+ FPN N
Sbjct: 666 ERLCTMGYRKHLLEVQYRMHPGINKFPNAN 695
>10_02_0050 - 4596444-4596634,4596855-4597107
Length = 147
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 561 SSGSARDQAAV--SGASGSCLDGGGQDLGRVDEQRGL 457
SSG D AA+ G + S GGG RV+E+R L
Sbjct: 42 SSGDGEDAAALHAGGEAKSTRGGGGAKSSRVEEERSL 78
>09_04_0237 -
15936630-15937250,15937457-15937534,15938874-15938973,
15940414-15942278
Length = 887
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 233 AVRHNSKAPETRSASVAAPSSESGSTCGTERWS 331
A RH + P R A+ AAP + G RW+
Sbjct: 178 APRHGGRRPAARMAARAAPGTGHARGAGNGRWA 210
>09_01_0111 +
1727021-1727206,1727324-1727373,1727440-1727491,
1727553-1727598,1727671-1727690,1727897-1727983,
1729290-1729466,1729542-1729565,1729639-1729725,
1729799-1729870,1730622-1732496
Length = 891
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 582 AGSARIVSSGSARDQAAVSGASGSCLDGGGQDLGR 478
AG + +S+G+ D + S LDGG Q+LGR
Sbjct: 317 AGGSENLSAGNFSDDTLEFESFYSTLDGGNQNLGR 351
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -2
Query: 378 TEIVERYTLRLT-----VDVKLQRSVPQVDPDSDDGAATEADRVSGALEL 244
TE+V++Y + ++V L R+ PQ+ PD + +AD + +++
Sbjct: 36 TELVKKYCQTMDGILDHLEVALNRAFPQITPDGELSKVIQADSIIAKMQI 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,446,447
Number of Sequences: 37544
Number of extensions: 410774
Number of successful extensions: 1503
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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