Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0901
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   5e-12
SB_43259| Best HMM Match : SOCS_box (HMM E-Value=0.00086)              58   7e-09
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)                 31   0.74 
SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.0  
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   6.9  
SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26)                   28   6.9  

>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 32/76 (42%), Positives = 47/76 (61%)
 Frame = +2

Query: 26  SSGTAVVRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDE 205
           S+GTA V GN    H  HY WEIK LTD  GT ++IGV +    +    + + +L+G+D+
Sbjct: 106 STGTAAVLGNKAFAHGQHY-WEIK-LTDVRGTSMMIGVATQDAMLHTDNYEYVNLVGRDQ 163

Query: 206 ESYGLSYTGAVRHNSK 253
           ES+GLS+ G + H  +
Sbjct: 164 ESWGLSHRGEIWHGGQ 179



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +1

Query: 274 FCRGTIIGVRVDLWNGTLEFYVNREPQGIAFYNLR-RHQVLFPMISSTAAQSSMKLIYAA 450
           F   T+IGV +D+  GT+ F+ N +P G+AF  L+ R   L+P+ SSTA++S ++L Y  
Sbjct: 187 FFDSTVIGVLLDMDKGTISFFKNGQPLGVAFTGLQDRGCELYPIASSTASESEVELGYRC 246

Query: 451 SWQASLL 471
              ++L+
Sbjct: 247 CKYSTLI 253


>SB_43259| Best HMM Match : SOCS_box (HMM E-Value=0.00086)
          Length = 174

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 29/65 (44%), Positives = 43/65 (66%)
 Frame = +1

Query: 274 FCRGTIIGVRVDLWNGTLEFYVNREPQGIAFYNLRRHQVLFPMISSTAAQSSMKLIYAAS 453
           F RGT IG+ VD W+G L F  + +P G+A   L+  + L+PM+SSTAA++ M+L  + S
Sbjct: 50  FDRGTTIGIHVDTWSGRLTFLRDDQPLGVAAEGLKGKE-LYPMVSSTAARTKMRLTRSTS 108

Query: 454 WQASL 468
            + SL
Sbjct: 109 LKHSL 113



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 14/40 (35%), Positives = 28/40 (70%)
 Frame = +2

Query: 128 LIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHN 247
           ++GVG+   ++   + +F S++G+D++S+GLSY G   H+
Sbjct: 1   MVGVGTKDTDLERYRSSFCSILGRDQDSWGLSYFGTFHHD 40


>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
          Length = 231

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 636 LLPVLYQHRCHQRNN-LQ*AGSARIVSSGSARDQAAVSGASGS---CLDGG 496
           +LPV Y + C QRNN L       ++ +G  R      G SG    C +GG
Sbjct: 112 MLPVAYDNHCMQRNNQLMRVDPVSMICAGGQRAAGGCQGDSGGPFVCNEGG 162


>SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +2

Query: 161 SDPQFTFT-SLIGQDEESYGLSYTGAVRHNSKAPETRSASVAAPSSESGSTCGTERWSFT 337
           S P +T T S       +   SYT    + S    T + S  +  S + +T  T   S+T
Sbjct: 22  STPSYTSTTSYTSTTSYTSTSSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYT 81

Query: 338 STVSRKV*RSTISVVTKSC 394
           ST S     S  S  + +C
Sbjct: 82  STTSYTSTTSYTSTTSYTC 100



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 173 FTFT-SLIGQDEESYGLSYTGAVRHNSKAPETRSASVAAPSSESGSTCGTERWSFTSTVS 349
           +TFT S       +   SYT    + S    T + S  + SS + +T  T   S+TST S
Sbjct: 2   YTFTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTSSYTSTTSYTSTTSYTSTTS 61


>SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +2

Query: 14  HPFYSSGTAVVRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLI 193
           HP   S T  +R        +H  WEI   T   GT  ++GV + K  +      + SL+
Sbjct: 84  HPVAQS-TDSIRAKVGFNRGFHV-WEIHWSTRQRGTHAVVGVATAKAPLHCT--GYHSLV 139

Query: 194 GQDEESYGLSYT-GAVRHNSKAPET 265
           G  E+ +G       + H+ K   T
Sbjct: 140 GNTEDGWGWDIVRNKLYHDEKGNST 164


>SB_842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
 Frame = -3

Query: 632 FQFYINIGVINETTFSRQGQPELS-------PQGLPETRRQFRAHQAPVLTEAARILAES 474
           FQ YI  GV+N     R+G+ + +       P+ L E +R  +  +  VLTE  R+L   
Sbjct: 276 FQRYIPNGVLNVVRRPRRGEEQNNEEERSRRPRVLTEEQRVRQRQRDLVLTEEQRVLKRQ 335

Query: 473 TSSE 462
           TS E
Sbjct: 336 TSYE 339


>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/73 (27%), Positives = 30/73 (41%)
 Frame = +2

Query: 176 TFTSLIGQDEESYGLSYTGAVRHNSKAPETRSASVAAPSSESGSTCGTERWSFTSTVSRK 355
           T TS       +   SYT    + S    T + S  + +S + +T  T   S+TST S  
Sbjct: 70  TTTSYTSTTSYTTTTSYTPTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYT 129

Query: 356 V*RSTISVVTKSC 394
              S  S  + +C
Sbjct: 130 STTSYTSTTSYTC 142


>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1311

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 116 GTDILIGVGSNKVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNSKAPETRSASVAA 286
           G  +++  G NK   ++       + GQDE++ GLSY+G    +    E R A + A
Sbjct: 636 GIRVIVITGDNKAT-AEAICRRIEVFGQDEDTTGLSYSGREFDDLTPSEQREACLRA 691


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
 Frame = +2

Query: 137  VGSNKVNISDPQFTFTSLIGQDEESY---GLSYTGAVRHNSKAPETRSASVAAPSSESGS 307
            V S     S P    TS  G +  S      ++T  ++  S  P T  ASV+  S  S S
Sbjct: 3040 VSSTSAGSSPPTSGITSSAGVNISSTITPTTTFTSIIKSESGIPSTSVASVSRSSISSSS 3099

Query: 308  TCGTERWSFTSTVSRKV*RSTISVV 382
            T  +   S T   S ++   T S +
Sbjct: 3100 TISSNTSSTTKRSSTRITAITSSAL 3124


>SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26)
          Length = 436

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 329 SNVPFHKSTRTPMMVPRQKPTESLVL*SCDA 237
           +N P++K T    + P  KP  + V+ SCDA
Sbjct: 56  NNTPWNKQTYKLSLPPASKPVHAPVILSCDA 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,074,310
Number of Sequences: 59808
Number of extensions: 448154
Number of successful extensions: 1414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)