Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0901
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical ...    35   0.053
AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    35   0.053
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...    33   0.21 
Z81052-2|CAB02875.1|  244|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>AF101310-1|AAC69216.2|  765|Caenorhabditis elegans Hypothetical
           protein C39F7.2 protein.
          Length = 765

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +1

Query: 271 GFCRGTIIGVRVDLWNGTLEFYVN-----REPQGIAFYNLRRHQVLFPMISSTAAQS 426
           G  RGT+IGVR+D   GT+E+ VN      +   +AF N+ R  + +P  S  A  S
Sbjct: 698 GVTRGTVIGVRLDCDRGTMEYTVNDRKRIYQDDSMAFTNMPR-GLYYPAFSVNANSS 753


>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +2

Query: 14  HPFYSSGTAVVRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLI 193
           HP   S T  +RG       +H  W+I+      GT  ++GV +    +    +T  +LI
Sbjct: 138 HPVAQS-TDCIRGKMGYSRGFHV-WQIEWPERQRGTHAVVGVATKNAPLHAAGYT--ALI 193

Query: 194 GQDEESYGLSYT-GAVRHNSK 253
           G  +ESYG   T     H+SK
Sbjct: 194 GTTDESYGWDITRRECHHDSK 214



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +1

Query: 304 VDLWNGTLEFYVNREPQGIAFYNLRRHQVLFPMISSTAAQSSMKLIYAASWQASLL 471
           +D+  G + F  + E  G+AF NL + + L+P++++      + + Y  S +  L+
Sbjct: 240 LDMDEGYMAFATDDEFLGVAFRNL-KGKTLYPIVAAVWGHCEISMRYLGSLERELI 294


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 35  TAVVRGNCPMIHNYHYYWEIKMLTDTYGTDILIGVGSNKVNISDPQFTFTSLIGQDEESY 214
           T  +RG       +H  W+I+      GT  ++GV +    +   ++T  +L+G + ESY
Sbjct: 55  TDCIRGKMGYSRGFHV-WQIEWPERQRGTHAVVGVATKNAPLQAAEYT--TLVGSNNESY 111

Query: 215 G 217
           G
Sbjct: 112 G 112


>Z81052-2|CAB02875.1|  244|Caenorhabditis elegans Hypothetical
           protein D2023.3 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +2

Query: 167 PQFTFTSLIGQDEESYGLSY--TGAVRHNSKAPETRSASVAAPSSE-SGSTCGTERWSFT 337
           P  +F  +IG DE S  LS   T  V+H+++   +   ++     +   ST   E W+ T
Sbjct: 152 PPDSFIRIIGLDEFSTELSRHKTDTVKHSTQPVYSHHCTMRFSKDKVETSTVRVEVWTVT 211

Query: 338 STVSRKV*RSTISV 379
             + RKV   +IS+
Sbjct: 212 GILRRKVQIGSISI 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,021,370
Number of Sequences: 27780
Number of extensions: 328258
Number of successful extensions: 1059
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)