Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0901
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    30   0.026
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.2  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 0.026
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = -2

Query: 555 GSARDQAAVSGASGSCLDGGGQDLGRVDEQRGLPRRCVDQLHARLGRGRADHREQDLVT- 379
           G   +Q AV   +GS L    Q L R+ +++      +      +   +  + E+D+V  
Sbjct: 116 GIVENQYAVENNTGSSLCDLVQGLERLFDEKNAGNNKIT-----MKSKKEQNAEEDIVDP 170

Query: 378 TEIVERYTLRLTVDVKLQRSVPQVDPDSDDGAATEADRVSGAL 250
            E  E Y    T+ + + RS+ +  P +D+G  T++DR  G++
Sbjct: 171 VEENETYDEFDTIRIPIVRSLSK-SPPNDEGIETDSDRRKGSI 212


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 134  GVGSNKVNISDPQFTFTSLIGQDEESYGLSY 226
            G GS   N+  P++   +    +E+ YG  Y
Sbjct: 1794 GGGSGTHNVFSPEYDDPANCAPEEDQYGSQY 1824



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 570 WLTLPTEGCFVDDTDVDIELEA 635
           W+  PT+  F   +D  +E +A
Sbjct: 681 WILEPTDKAFAQGSDARVECKA 702



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 512  PVLTEAARILAESTSSEACH 453
            P++ EAAR +  +T+S   H
Sbjct: 1461 PIIPEAARFIEVATNSITLH 1480


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 74  SYESLGSFPGPLQYPNYRMDE 12
           +Y ++ SFP  L  P+ ++DE
Sbjct: 379 NYLTVHSFPSTLNIPSVKIDE 399


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +2

Query: 149 KVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNSKA 256
           K+N+S+  + +  +    +  + L Y G V    K+
Sbjct: 552 KINVSEDAYRYLCMPENQDSQFLLEYRGPVTMKGKS 587


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +2

Query: 149 KVNISDPQFTFTSLIGQDEESYGLSYTGAVRHNSKA 256
           K+N+S+  + +  +    +  + L Y G V    K+
Sbjct: 552 KINVSEDAYRYLCMPENQDSQFLLEYRGPVTMKGKS 587


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 385  QVLFPMISSTAAQSSMKLIYAASWQASLLVD 477
            +V+ P+I +T A     +I A  W++  L D
Sbjct: 1612 KVMLPLIVATVALVVAVVIVALRWRSRYLGD 1642



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 576  SARIVSSGSARDQAAVSGASGSCLDGGGQDLGRVDEQRGLPRR 448
            S+  + +G  +   AVS            D+  + EQ+ LPRR
Sbjct: 1799 SSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRR 1841


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 385  QVLFPMISSTAAQSSMKLIYAASWQASLLVD 477
            +V+ P+I +T A     +I A  W++  L D
Sbjct: 1608 KVMLPLIVATVALVVAVVIVALRWRSRYLGD 1638



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 576  SARIVSSGSARDQAAVSGASGSCLDGGGQDLGRVDEQRGLPRR 448
            S+  + +G  +   AVS            D+  + EQ+ LPRR
Sbjct: 1795 SSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRR 1837


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,293
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)