Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0901
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43210.1 68418.m05280 endo/excinuclease amino terminal domain...    30   1.9  
At3g54550.1 68416.m06036 hypothetical protein contains Pfam prof...    30   1.9  
At1g11480.1 68414.m01319 eukaryotic translation initiation facto...    29   2.4  
At4g36760.2 68417.m05215 aminopeptidase P similar to Xaa-Pro ami...    28   5.7  
At4g36760.1 68417.m05216 aminopeptidase P similar to Xaa-Pro ami...    28   5.7  
At3g27470.1 68416.m03433 expressed protein contains Pfam profile...    28   5.7  
At2g22660.1 68415.m02685 glycine-rich protein                          28   5.7  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    28   7.5  
At5g44090.1 68418.m05394 calcium-binding EF hand family protein,...    27   9.9  

>At5g43210.1 68418.m05280 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 170

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 349 PQGIAFYNLRRHQVLFPMISSTAAQSSMKLIYAASWQASLLVDSAK 486
           P+   F NL+  Q   P+ SS++ Q + K+  + SW   L++ + +
Sbjct: 19  PKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILSTTE 64


>At3g54550.1 68416.m06036 hypothetical protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 288

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 513 SCLDGGGQDLG-RVDEQRGLPRRCVDQLHARLGRGRADHREQDLVTTEIVER 361
           +C  G G D     DE+    RR +  L + L       R+ +  TTEIVER
Sbjct: 86  NCFSGSGTDSSDEDDEESSSSRRVLRSLKSLLLCANVSERDLETKTTEIVER 137


>At1g11480.1 68414.m01319 eukaryotic translation initiation
           factor-related contains weak similarity to
           Swiss-Prot:P23588 eukaryotic translation initiation
           factor 4B (eIF-4B) [Homo sapiens]
          Length = 578

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +1

Query: 256 TRDSVGFCRGTIIGVRVDLWNGTLEFYVNREPQGIAFYNLRRHQVLFPMISSTAAQSSMK 435
           T    G    ++ G   ++WNG  E  V     G + +  +      P +S+    S++ 
Sbjct: 137 THSGTGNIENSVSGNHSNIWNGRKEVSVANNEPGQSPWTKQ------PAVSNLVHTSALD 190

Query: 436 LIYAASWQASLLVDS 480
            + +  WQ+ LLV S
Sbjct: 191 QVSSGGWQSKLLVPS 205


>At4g36760.2 68417.m05215 aminopeptidase P similar to Xaa-Pro
           aminopeptidase 2 [Lycopersicon esculentum] GI:15384991;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 519

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 621 IELEAAKAMPLSSGMKRKHWLKPSSTCLFLQKNTDS 728
           ++ EAAK M + S    + W+ P+S C  L    D+
Sbjct: 263 VQHEAAKDMEIDSDQPDRLWVDPASCCYALYSKLDA 298


>At4g36760.1 68417.m05216 aminopeptidase P similar to Xaa-Pro
           aminopeptidase 2 [Lycopersicon esculentum] GI:15384991;
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 634

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 621 IELEAAKAMPLSSGMKRKHWLKPSSTCLFLQKNTDS 728
           ++ EAAK M + S    + W+ P+S C  L    D+
Sbjct: 263 VQHEAAKDMEIDSDQPDRLWVDPASCCYALYSKLDA 298


>At3g27470.1 68416.m03433 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 398

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 644 RLCCFQFYINIGVINETTFSRQGQPELSPQGLPETRRQ 531
           R C    +  IGV++      QG P L  QG PE  +Q
Sbjct: 319 RKCVQNAHEKIGVVDAQWIIHQGVPSLGNQGQPEQGKQ 356


>At2g22660.1 68415.m02685 glycine-rich protein 
          Length = 819

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 337 VNREPQGIAFYNLRRHQVLFPMISSTAAQSSMKL 438
           V+REP+ + F +L   + LFP+I+  + +  ++L
Sbjct: 406 VSREPKNLGFASLSLKEFLFPVITQLSVEKWLEL 439


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
            PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -3

Query: 605  INETTFSRQGQPELSPQGLPETRRQFRAHQAPVLTEAARILAESTS 468
            I++ +F  +  P+LSP+  P T++Q  A     L +  ++  +  S
Sbjct: 874  IDKVSFDEESPPKLSPEAKPLTKQQGSASSLSYLPKTEKVSHDQES 919


>At5g44090.1 68418.m05394 calcium-binding EF hand family protein,
           putative / protein phosphatase 2A 62 kDa B'' regulatory
           subunit, putative contains Pfam profile: PF00036 EF
           hand; identical to cDNA protein phosphatase 2A 62 kDa
           B'' regulatory subunit GI:5533378
          Length = 538

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -3

Query: 635 CFQFYINIGVINETTFSRQGQPELSPQGLPETRRQFRAHQAPVLTEAARILAE 477
           C    +  G    + F   G P LSP+G P + R  R   +P L    + + E
Sbjct: 70  CTSLNVACGSALPSVFLNSGTPPLSPRGSPGSPRFSRQKTSPSLQSPLKSVRE 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,167
Number of Sequences: 28952
Number of extensions: 309410
Number of successful extensions: 928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)