Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0900
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    54   2e-08
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    29   0.55 
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    29   0.96 
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    27   3.9  
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi...    26   5.1  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   5.1  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   6.7  
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    26   6.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   8.9  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
 Frame = +1

Query: 532 ILVTTNYRLGPLGFLSTKD--EHCP--GNNGLKDQQEALRFIQQNIESFGGNKDSVTIFG 699
           ILV+  +RL   GFL+ K+  E  P   N G  DQ+  L +  ++IESFGGNK+++ + G
Sbjct: 136 ILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGG 195

Query: 700 ESAGGSSVHFHMLSDT 747
            SAG  S  F ++ +T
Sbjct: 196 ISAGSYSALFQLIYET 211



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +2

Query: 314 PICVQRNPYVRQKDIVGQEDCLYLNVYVPATTNDDKSKKELLPVMLFLHGGGWM 475
           P    R   VR  D    EDCL+LN++VPA     +   E  PV+ F+H GGW+
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPA----GEKPAEGWPVLYFIH-GGWL 110



 Score = 33.1 bits (72), Expect = 0.044
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 153 LGEVAGYYMTTRGGRQ-ISAFTAIPFAKPPVGELRLKHQSRLGHGKEY 293
           +G + G  +    G++    FT I +AKPPVG+LR +    L  G +Y
Sbjct: 1   MGVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDY 48


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 613 LKDQQEALRFIQQNIESFGGNKDSVTIFGESAGGS 717
           + D  EAL +  +N ++ G N + + + G SAGG+
Sbjct: 151 IDDGWEALLYCYENADTLGINPNKIAVGGSSAGGN 185



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 440 PVMLFLHGGGWMCGDATT 493
           P  L+ HGGGW+ G+  T
Sbjct: 101 PCFLWFHGGGWVLGNINT 118


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 418 IIIGRGGNIHIKIQTVFLSNDIFLTD--IWIPLNAYWAYFCGV*YSFPW 278
           II+   G + + +   + ++D+ L    IWI L  + A      Y FPW
Sbjct: 189 IILLGAGTVFVPLMWCYFTHDLHLVTMYIWITLRLFQAVDSHAGYDFPW 237


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 612 SERSTRGTPFYSAKHRKLRW 671
           ++RSTR + FYS+K + L W
Sbjct: 154 NQRSTRKSQFYSSKFKPLLW 173


>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = +1

Query: 55  RRDFA*ISYFLLSH*CCFATMQALKKGLRSRRLWARLPVIT*PPEAVGKYRLLR----PY 222
           +R  A +SY ++     F T + + K   SR++WA L +IT    + G Y   R    PY
Sbjct: 163 KRVGAFLSYIIVGA-ALFFTRKIIVKIFTSRKVWAALTIITVITLSSG-YMFTRIRFSPY 220

Query: 223 HLRNHRSEN 249
             R    EN
Sbjct: 221 SQRGEHGEN 229


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 114 DASSEERPAVTTPLGEVAGYYMTTRGGRQISAFTAIPFAKPPVGELRLKHQS 269
           +AS E  P+V  P G     +  T   R     +  P + PP+ E  L+ Q+
Sbjct: 74  NASLETLPSVEKPRGRNMNAFEETSWNRFRKNGSLFPLSSPPISEPDLRPQA 125


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 619 DQQEALRFIQQNIESFGGN-KDSVTIFGESAGGS--SVHFHMLSD 744
           D  ++ +++  NIE  G N K    + G SAGG+  SV  H+  D
Sbjct: 143 DAIDSFKWVASNIEKLGANPKRGFFLGGASAGGNFVSVLSHIARD 187


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 643 IQQNIESFGGNKDSVTIFGESAGGSSVHF 729
           I++ +++FG NK  +T+F         HF
Sbjct: 317 IEKTVKTFGANKFCLTLFQAKGASQEKHF 345


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 384 LMCMFPPRPMMIKAKRNYYR*CCFCTEE 467
           L C+ PP   M+    NY   C  CTE+
Sbjct: 67  LSCLSPPCTSMMGFSTNYQFVCKHCTED 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,455,769
Number of Sequences: 5004
Number of extensions: 76538
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)