Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0898
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    31   0.17 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    27   2.1  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   2.8  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    27   3.7  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    27   3.7  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   3.7  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    27   3.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.7  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   6.5  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   6.5  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    25   8.6  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 282 PLPAPRNLPDYRTDYRKPSNVELEKRLQES 371
           PLP PR  P    + +  +N  +EKR+QES
Sbjct: 621 PLPPPRTTPYQNAEQKLKANKHVEKRVQES 650


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 488 LDSTIPSPTVHYAKPPIPANGIATRPPERDGPFVFGIHSPSQFPIPEKTT-MITIIPK*P 664
           L+ +  +PT   A PPIP +  ++RPPER    V  + +P+  PIP  +   ++  P  P
Sbjct: 217 LNESAGTPTSTSA-PPIPPSIPSSRPPER----VPSLSAPAPPPIPPPSNGTVSSPPNSP 271

Query: 665 KRTV 676
            R +
Sbjct: 272 PRPI 275


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 215 WRNRKSLRWWFRASAPRHWPTPASAGAEKPAR 310
           W   +   +WF   A   WP   +A  E+P R
Sbjct: 184 WNKLQHTDYWFENDADAEWPKSKNADWEEPPR 215


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 273 PHRPLPAPRNLPDYRTDYRKPSNVE-LEKRLQESRAREKISYFQD 404
           P   LP PR  P+Y     +P  +E ++K+L + R  E I  F D
Sbjct: 236 PFERLPDPRMFPEYYQAIEQPMALEVIQKKLSKHR-YETIEQFVD 279


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +3

Query: 330 KPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREAELVFRFDNHEPTEYSTAQYRA 509
           KP + + +K+L +S    +  YF++ +   +   D+  A L+   ++  P + S  + R 
Sbjct: 81  KPKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSAGLINDEEDKSPAKQSVLEERT 140

Query: 510 RQ 515
            Q
Sbjct: 141 SQ 142


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 628 KDDDDYDYSEVTEENGRTVIRDDDSED 708
           + D+DYD S   E+   TV  D++SE+
Sbjct: 132 ESDEDYDLSPTEEDLVETVSGDEESEE 158


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 512 TVHYAKPPIPANGIATRPPERDGPFVFGIHSPSQFPIP 625
           T+H   PP+     A RPP  + P V    + S+FP P
Sbjct: 93  TIHNPMPPMSQ---AYRPPPTEPPTVPAYETSSEFPPP 127


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = +3

Query: 309 DYRTDYRKPSNVELEKRLQESRAREKISYFQDKVTPPELNL-DRREAELVFRFDNHEPTE 485
           D    + K   +  E    + +     +Y Q   +PP L L +  +  +V  +D   P +
Sbjct: 47  DISVHHNKEEEIARETAFDDVQKEIFETYGQKLPSPPVLKLKNATQTSIVLEWD---PLQ 103

Query: 486 YSTAQYRARQCIMRNLRFQQMG*PLVLRNA 575
            STA+ ++      N+R   +  P+   NA
Sbjct: 104 LSTARLKSLCLYRNNVRVLNISNPMTTHNA 133


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 500  IPSPTVHYAKPPIPANGIATRPPERDGPFVFGIHSPSQF-PIPEKTTMITIIP 655
            +P P+V  A PP+PA      P  +    V  +  PS+  P+P+ +  +  +P
Sbjct: 1161 VPKPSV--AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 348 LEKRLQESRAREKISYFQDKVTPPELNLDRREAE 449
           +EK + ESR R      Q +   PEL + +R+AE
Sbjct: 629 VEKIMDESRKRRSNQLEQTQDGKPELKIKKRKAE 662


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 360 LQESRAREKISYFQDKVTPPELNLDRREAELVFRFDNHEPTEYSTA 497
           LQ+ +ARE + YF+         L R E+E+V  F   E T    A
Sbjct: 569 LQQGKAREALEYFEKSA-----QLARTESEMVNAFSYAEATRTQIA 609


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 321 DYRKPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREA-ELVFRFDNHEPTEYSTA 497
           D   PSNVEL+K+ +++   +   +  + +   ++N D   A ++ + FD    TE + A
Sbjct: 69  DEEMPSNVELKKKSKKATPAKDSDFNGEFLFEADVNKDLSSATDMNWDFDMGSKTESNRA 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,315
Number of Sequences: 5004
Number of extensions: 65799
Number of successful extensions: 225
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)