Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0898
(743 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39904| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15) 29 3.0
SB_45437| Best HMM Match : Ribosomal_L15e (HMM E-Value=0.53) 29 5.3
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15) 29 5.3
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_54040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_17492| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_24209| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 28 7.0
SB_46932| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 9.2
SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26) 28 9.2
SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05) 28 9.2
SB_50134| Best HMM Match : Sorting_nexin (HMM E-Value=6.3) 28 9.2
SB_46285| Best HMM Match : DM (HMM E-Value=4.7) 28 9.2
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 28 9.2
SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_37516| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_25550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_16158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_5860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_39904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Frame = -3
Query: 261 GADARNHHRRLLRFRQQWSACRQICVPVEHNAFQARRHLYCHECL--PT---KKSPKRAF 97
G + +++ RFR Q C VP E Q R+ ++C C PT K+ K F
Sbjct: 77 GVKEAYNFKKMSRFRNQMGGCASQVVPEEVAGQQPRKRVWCVCCTVRPTIDEMKNWKHDF 136
Query: 96 AHITRVLYFVGLFESYAR 43
+ Y V F+ + R
Sbjct: 137 HALLSSKYGVNQFQEFLR 154
>SB_17683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 907
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 503 PSPTVHYAKPPIPANGIATRPPERDGPFVFGIHSPSQFPIPEKTTMITIIPK 658
PSP VH+ P + N + PP++ SPS PIP K M+ + K
Sbjct: 836 PSPHVHFKDPLVAPNQSGSDPPKK---------SPSVSPIPFKVPMVPPVHK 878
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 628 KDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 735
K+DDD+D+ + ++ + DDD ED D VND
Sbjct: 24 KEDDDFDHYDGVDDVDDSDDDDDDDEDDIILDDVND 59
>SB_25416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 267 CRGADARNHHRRLLRFRQQWSACRQIC-VPVEHNAFQARRHLYCHECLPTK 118
CR ++RL+ F WS R++ + N FQ+ HL ECLP K
Sbjct: 57 CRQQHKDALYKRLVDF--DWSPLRELSSIDDIANTFQSTLHLLMDECLPLK 105
>SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15)
Length = 111
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 595 NTQSESVPHPRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDW 738
+++SE P DD DYD + E + + + CCD+ ++W
Sbjct: 21 SSESEEEEIPGDDDSDYDPNNDPERLWCICRKPHGNRFMICCDRCDEW 68
>SB_45437| Best HMM Match : Ribosomal_L15e (HMM E-Value=0.53)
Length = 273
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 488 LDSTIPSPTVHYAKPPIPANGIATRPPERDGPFVF 592
+D P PT H KP +PA + RP + F +
Sbjct: 109 VDEDTPKPTTHVGKPVVPA-ALMNRPTRGERRFAY 142
>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
Length = 1001
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 631 DDDDYDYSEVTEENGRTVIRDDDSED 708
D+DD D +EV EEN V DDDS D
Sbjct: 606 DEDDDDTAEVHEEN-EQVSSDDDSTD 630
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 273 PHRPLPAPRNLPDYRTDYRKPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREAE 449
P P + P + +P N EK ++E ++ +QDK P++N + E E
Sbjct: 387 PDNDHPTDVDKPAGDPEDERPKNQSPEKGMEEPVKSDQEGSYQDKQDSPDVNRETEEVE 445
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 622 PRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 735
P + DYDY E E+ D+ +D +CCD D
Sbjct: 1215 PDYGNGDYDYDENDEDEEGDDDYDNGDDDNDCCDHDED 1252
>SB_47853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +1
Query: 436 DEKQSSCSGS--ITTNPRNTRQHNTEPDSALCETXXXXXXXXXXXXGTRRTFCFRNTQSE 609
+E QS+ + ++T+P NTR+ + + LC T +
Sbjct: 26 EEAQSTVNKKKRLSTSPLNTREVAVK--TGLCPKKNKTKNEEKKRMRGHTTSSDSSDDDT 83
Query: 610 SVPHPRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVN 732
+V + DDDDY E+ + + D E+ +VN
Sbjct: 84 NVIYDESDDDDYSSRNDEEDEDAEEVEEHDGENAEVSQEVN 124
>SB_54040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 625 RKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDW 738
R DDDD D+ +++ DDD++D+ D +D+
Sbjct: 4 RDDDDDDDHIADDDDDDHIADDDDDNDDIGYDDNDDDY 41
>SB_17492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 631 DDDDYDYSEVTEENGRTVI--RDDDSEDLN 714
DDDD D ++ E R ++ DDD ED+N
Sbjct: 65 DDDDDDDDKIMESEVRMLVTSHDDDDEDVN 94
>SB_24209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 631 DDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVNDW 738
DDDD D + +++ V DDD +D + D ND+
Sbjct: 21 DDDDDDDDDDDDDDDDDVCDDDDDDDCDELDYNNDY 56
>SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 182 GTQICRHADHCWRNRKSLRWWFRASAPRHWPTPASAGAEKPARLSNRLQETIECRT*KEA 361
G+ CR D R+R W RH T A + +P + Q++ +T +A
Sbjct: 716 GSTACRSGDSASRSRTVQIWTVSNGVSRHLNTRAPPTSARPCIAMSTTQQSKITKTITDA 775
Query: 362 AGVT 373
A +T
Sbjct: 776 AVIT 779
>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 917
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 285 LPAPRNLPDYRTDYRKPSNVELEKRLQESRAREKISYFQDK 407
+P P LP+YR+D + S +R R R+ +Y+ D+
Sbjct: 427 VPRPEPLPEYRSDLERDSYYRESRRRSYFRDRDD-AYYDDR 466
>SB_46932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 586 CFRNTQSESVPHPRKDDDDYDYSEVTEENGRTVIRD 693
C+ +TQS PHP K ++V ++ GR ++RD
Sbjct: 42 CWGHTQSTCAPHPTK---GIGCTDVPDKWGRKIVRD 74
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 497 TIPSPTVHYAKPPIPANGIATRPPE-RDGPFVFGIHSPSQ-FPIPEKTTMITIIPK*PKR 670
T P+PT H P P +T P + P +P+Q P P T T PK P
Sbjct: 27 TKPTPTTHTPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTP 86
Query: 671 T 673
T
Sbjct: 87 T 87
>SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 297 RNLPDYRTDYRKPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREAE 449
R LP Y +PS VE + +ESR+ S +DK TPP L E E
Sbjct: 199 RRLP-YTPHAPRPSPVESD---EESRSNSSSSVDRDKETPPPSPLPATERE 245
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Frame = +3
Query: 252 RPPRDIGPH----RPLPAPRNLPDYRTDYRKPSNVELEKRLQESRAREKISYFQDKVTPP 419
RPPR PH RPL PR Y Y +P + + + +Y + + PP
Sbjct: 186 RPPRFDHPHERYGRPLSPPRRGDPYLDHYDRPLDPYPPRERYRDEPPPRDAYGRHDLPPP 245
Query: 420 ELNLDRREAE 449
DR +
Sbjct: 246 RDPYDRERRD 255
>SB_8393| Best HMM Match : DUF662 (HMM E-Value=3.9e-26)
Length = 319
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 261 RDIGPHRPLP-APRNL--PDYRTDYRKPSNVELEKRLQESRAREKIS 392
R+I P P + R+L PD + KPS+VELE++ Q E I+
Sbjct: 80 REIPRENPAPESERSLSPPDSKIQEEKPSSVELEEQKQMDTEPEMIT 126
>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
Length = 525
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 312 YRTDYRKPSNVELEKRLQESRAREKISYFQDKVTPPELNLDRREAELVFRFDNH 473
Y Y S +++ + E+ + +S FQ + NL+ E EL+ D H
Sbjct: 93 YSRYYSPHSFEQMKSKFTENDKKHNLSVFQSNIRSIRSNLENLENELLGELDYH 146
>SB_50134| Best HMM Match : Sorting_nexin (HMM E-Value=6.3)
Length = 310
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 252 RPPRDIGPHRPLPAPRNLPDYR 317
+PP+ +P+PAPRN P+ +
Sbjct: 177 KPPKPAHRQKPVPAPRNKPELK 198
>SB_46285| Best HMM Match : DM (HMM E-Value=4.7)
Length = 233
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 589 FRNTQSESVPHPRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 735
+ N E+ DDDD D + +++ V DDD+ D N D ND
Sbjct: 78 YDNDDDENDDDDNNDDDDNDDDD--DDDNNDVDGDDDNNDNNKDDDNND 124
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 634 DDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 735
DDDYD + ++N DDD++D + C V D
Sbjct: 406 DDDYDDDDDNDDND-IGYDDDDNDDDDVCGNVGD 438
>SB_41289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 294 APAEAGVGQCRGA-DARNHHRRLLRFRQQWSACRQICVPVEHNAFQARRHLYCHECLPTK 118
+P +A V CR DA H F+ ++ C+ AF RR+LYC E LP K
Sbjct: 41 SPEKAPVSVCRDVVDAAIKHGE---FKGVFNGCKP--------AFDGRRNLYCREPLPLK 89
>SB_37516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 622 PRKDD-DDYDYSEVTEENGRTVIRDDDSEDLNCCD 723
P+ DD +DY TEENG+T+++ S ++ CD
Sbjct: 10 PKIDDHNDYKLISGTEENGKTILK--FSRKIDTCD 42
>SB_25550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 631 DDDDYDYSEVTEENGRTVIRDDDSEDLNCCDKVND 735
DDDD DY +V ++G D D +D+N D + D
Sbjct: 104 DDDDVDYDDVNYDDGD--YDDYDYDDVNYDDVIYD 136
>SB_16158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 345 ELEKRLQESRAREKISYFQDKVTPPELNLDR-----REAELVFRFDNHEPTEYST-AQYR 506
ELE RL+ A+EK S ++ EL L++ ++A+++ R + + A+ +
Sbjct: 58 ELESRLKSEAAKEKASALKEAKEASELELEKAMATAKKAQVLLRLRARSGRDKAVKAESK 117
Query: 507 ARQCIMRNLRFQQM 548
+ +M+ L QQ+
Sbjct: 118 RVEALMKKLAAQQV 131
>SB_5860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 586 CFRNTQSESVPHPRKDDDDYDYSEVTEENGRTVIRDDDSEDL 711
C+ T SE++ H D+DD D + +++ DDD +D+
Sbjct: 2 CYIQTISETLLHLDNDNDDDDDDDDDDDDDDDDDDDDDDDDV 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,815,830
Number of Sequences: 59808
Number of extensions: 548795
Number of successful extensions: 3198
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 2030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2972
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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