Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0898
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    31   1.1  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    31   1.1  
Z70287-6|CAH04747.1|  443|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF067216-13|AAK71359.1|  129|Caenorhabditis elegans Hypothetical...    28   8.0  

>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 381 EKISYFQDKVTPPELNLDRREAELVFRFDNHEPTEYSTAQY 503
           + + ++ D+ TPP +  D  +      + NHEPT  ST  Y
Sbjct: 218 DDVRHYADETTPPPVLHDVADRYSTVAYMNHEPTHNSTRVY 258


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 381 EKISYFQDKVTPPELNLDRREAELVFRFDNHEPTEYSTAQY 503
           + + ++ D+ TPP +  D  +      + NHEPT  ST  Y
Sbjct: 440 DDVRHYADETTPPPVLHDVADRYSTVAYMNHEPTHNSTRVY 480


>Z70287-6|CAH04747.1|  443|Caenorhabditis elegans Hypothetical
           protein R09E10.9 protein.
          Length = 443

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +2

Query: 494 STIPSPTVHYAKPPIPANGIATRPPER----DGPFVFGIHSPSQFPIPEKTT 637
           STIPSP+     PP  +    T PP      + P V  + SPS  P P  TT
Sbjct: 350 STIPSPSKVVPNPPQKSLITPTVPPSMIQTVNPPTVSALPSPSVSPAPVPTT 401


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 375  HVTPAASFQVRHSMVSCNRFDNRAGFSAPAEAGVGQCRGADARNHHRRL 229
            HV+ A++     ++V C+   NR    AP +   G        NHH+ +
Sbjct: 1060 HVSTASTATTTGTVVQCSNSLNRQNIPAPLKIQNGNSESYHEHNHHQHV 1108


>AF067216-13|AAK71359.1|  129|Caenorhabditis elegans Hypothetical
           protein C35E7.11 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 619 HPRKDDDDYDYSEVTEENGRTVIRDDDSEDLNCCDK 726
           H   +DD YD  E+ + NG +V+ +  S ++   D+
Sbjct: 67  HQLIEDDTYDEEELKKANGGSVVEEKGSTEVEAQDE 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,729
Number of Sequences: 27780
Number of extensions: 402574
Number of successful extensions: 1563
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)