Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0898
(743 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 27 0.25
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 24 1.3
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 24 1.3
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 24 1.3
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 24 1.3
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 23 3.0
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 23 3.0
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 23 3.0
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 4.0
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 7.0
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 7.0
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 26.6 bits (56), Expect = 0.25
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 592 RNTQSESVPHPRKDDDDYDYSEVTEENGRTVIRDDDSEDL 711
R T S S+ H + D+ DYS T+EN + D D + L
Sbjct: 217 RLTNSNSIKH---ESDNSDYSHTTDENRHSSTLDIDHKML 253
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 483 EYSTAQYRARQCIMRNLRFQQM 548
EY+T Y A++ MR RFQ++
Sbjct: 300 EYATVGYMAKRIQMRKNRFQKI 321
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 483 EYSTAQYRARQCIMRNLRFQQM 548
EY+T Y A++ MR RFQ++
Sbjct: 300 EYATVGYMAKRIQMRKNRFQKI 321
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 24.2 bits (50), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 483 EYSTAQYRARQCIMRNLRFQQM 548
EY+T Y A++ MR RFQ++
Sbjct: 239 EYATVGYMAKRIQMRKNRFQKI 260
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 24.2 bits (50), Expect = 1.3
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Frame = +1
Query: 448 SSCSGSITTNP--RNTRQHNTEPDSALCETXXXXXXXXXXXXGTRRTFCFRNTQSESVPH 621
S C+ S TT+P + HN + S L E G + T + ++
Sbjct: 632 SMCT-STTTSPDKEHVLAHN-DLMSPLDEPAVHIKQEGQSPEGGKLTRLIKRELVDAPAD 689
Query: 622 PRKDDDDYDYSEVTEENGRTVIRDDD-SEDLN 714
DDD D E E +G +D+D +EDL+
Sbjct: 690 QEGDDDQVDEREYPESHGHDSGQDEDMAEDLS 721
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 23.0 bits (47), Expect = 3.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 261 RDIGPHRPLPAPRNLPDYRTDYRKPSN 341
R IGP P P PR +P +R P N
Sbjct: 148 RYIGP--PTPFPRFIPPNAYRFRPPQN 172
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 23.0 bits (47), Expect = 3.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 261 RDIGPHRPLPAPRNLPDYRTDYRKPSN 341
R IGP P P PR +P +R P N
Sbjct: 148 RYIGP--PTPFPRFIPPNAYRFRPPQN 172
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 23.0 bits (47), Expect = 3.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 261 RDIGPHRPLPAPRNLPDYRTDYRKPSN 341
R IGP P P PR +P +R P N
Sbjct: 386 RYIGP--PTPFPRFIPPNAYRFRPPQN 410
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 22.6 bits (46), Expect = 4.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 255 DARNHHRRLLRFRQQWSACRQICVPVEHNAFQARRHL 145
+A H++ RQ+ SA + V V+H Q HL
Sbjct: 639 EAYKPHKKFRALRQKDSAEAEPAVIVQHTQSQLHLHL 675
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 310 SGRFLGAGRGRCGPMSRGG 254
+GR G G G+ G RGG
Sbjct: 78 TGRGKGRGHGKGGSRGRGG 96
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.8 bits (44), Expect = 7.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 594 PKTKGPSRSGGRVAIPFAGIGG 529
P+ GP + A+ AG+GG
Sbjct: 557 PRMSGPVAAVAAAAVAAAGVGG 578
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,525
Number of Sequences: 438
Number of extensions: 4700
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -