Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0897
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 114 8e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 101 8e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 80 2e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.43
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 1.0
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.3
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 30 2.3
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.3
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 7.1
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 7.1
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2) 28 7.1
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 9.4
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 9.4
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 114 bits (274), Expect = 8e-26
Identities = 54/95 (56%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +1
Query: 259 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 438
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 439 TREHALLAFTLGVKQLIVGVNK--MVPLNHHTVSP 537
TREHA+L +LGV QLIV +NK MV L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 101 bits (241), Expect = 8e-22
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 435
T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + G
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGG 268
Query: 436 QTREHALLAFTLGVKQLIVGVNKM 507
QTREHA+LA T GVK L++ VNKM
Sbjct: 269 QTREHAMLAKTAGVKHLVILVNKM 292
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +2
Query: 128 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERG 253
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG 207
Score = 33.9 bits (74), Expect = 0.14
Identities = 11/24 (45%), Positives = 21/24 (87%)
Frame = +3
Query: 525 YSEPRFEEIKKEVSSYIKKIGYNP 596
++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 190
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 80.2 bits (189), Expect = 2e-15
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 366
TIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 24 TIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 51.2 bits (117), Expect = 9e-07
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +2
Query: 188 MGKGSFKYAWVLDKLKAERERG 253
MGKGSFKYAWVLDKLKAERERG
Sbjct: 1 MGKGSFKYAWVLDKLKAERERG 22
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = +2
Query: 656 NQMPWFKGWQVER------KEGKADGKCLIEALDAILPP 754
+QMPWFK W +ER KE A G L E LD+ILPP
Sbjct: 59 SQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPP 97
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 44 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 139
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 295 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +2
Query: 68 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 247
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 248 RG 253
RG
Sbjct: 1987 RG 1988
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 310 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 489
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 490 VGVNKM 507
+ NK+
Sbjct: 123 ILQNKI 128
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 307 IIDAPGHRDFIKNMITGTSQADCAVLIV 390
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 594 PAAVAFVPISGWHGDNMLE--PSTKCLGSRDGRWSVRKAKLTENASLKLSMPSCH 752
P ++ IS G ++ + P TKC +GRW K +T N CH
Sbjct: 1581 PIDAIYIEISNTLGHSLRDSLPVTKCFKRLEGRWEEYKNTITSNEITSPIQVVCH 1635
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 301 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 405
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 59 THINIVVIGHVDSGKSTTTGHLIY 130
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -1
Query: 283 RTSREQYRLCTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 113
RT+ TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 283 RTSREQYRLCTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 113
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 427 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 465 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
H + + RR ++N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 283 RTSREQYRLCTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 113
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 538 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 283 RTSREQYRLCTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 113
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/47 (25%), Positives = 19/47 (40%)
Frame = +1
Query: 256 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 396
T I + + + +D PGH F G D +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 510 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 650
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
Length = 125
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +3
Query: 435 SNP*ACLARFHPRC-----QTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
+N A L RF C ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 25 NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82
>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 465 HPRCQTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKKIGYN 593
H ++A RR ++N + + P+F+ +K + S KKI N
Sbjct: 8 HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 283 RTSREQYRLCTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 113
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 283 RTSREQYRLCTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 113
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 8 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 283 RTSREQYRLCTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 113
RT+ TT+T S YPS+ + +F D T N TT V +++
Sbjct: 410 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,557,926
Number of Sequences: 59808
Number of extensions: 523982
Number of successful extensions: 1642
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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