Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0896
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    30   0.31 
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             26   5.1  
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    26   6.7  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   6.7  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   8.9  

>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 142 NGDLAEADQTCHVDMDESGTVDGDEAGVN--AEALPDVVEPTKSRLQR*CNMFFIVH 306
           +G+L+  D     D   +G+   +   +N   E +  VV+P   R+   C MFF+ H
Sbjct: 95  SGELSYKDNNHWSDRSSTGSPRWENGSMNLSVEEMEKVVQPKVKRMATICQMFFLDH 151


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = +1

Query: 91  HSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDGDEAGVNAEALPDVVEPTKS 267
           H N+   VDLI      +    E +   H   DE  T D +   +    L ++  P KS
Sbjct: 262 HDNEQDDVDLIGWECFFDDSSDELNTLSHQADDEGDTTDEETPELQNNKLLNLSTPKKS 320


>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 188 TRVALSMVMKLESMRKLCPTSWNRR-SHAYRGNA 286
           T+VA + ++  E+M+KL P  W+++  H+  G +
Sbjct: 892 TKVAHACLVSPEAMKKLTPQEWSQKVCHSIGGRS 925


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 97  NQDSKVDLINCSEM-HNGDLAEADQTCHVDMDESGTVDGDEAGVNAEALPDVVEPTKSRL 273
           N  S +D+    ++ +N ++    Q   VD      V      VN + + ++VEP+K ++
Sbjct: 301 NVQSGIDIEKTIQLLNNQEIPSEQQIISVDKATESPVQEVAVDVNEKPVDEIVEPSKLQM 360

Query: 274 Q 276
           +
Sbjct: 361 E 361


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 49  HIDIEPTDVNDGAHHSNQDSKVDLINCSEMHN 144
           H+D   + V + +H  +Q+S   LI+ SE H+
Sbjct: 362 HLDFSDSAVTNQSHSQSQNSLHPLISQSETHS 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,219
Number of Sequences: 5004
Number of extensions: 58354
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)