Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0896
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796...    30   1.7  
04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644...    29   4.0  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    28   7.1  
04_04_1012 - 30104401-30104955,30105066-30106841                       28   9.3  
04_04_1005 - 30043698-30044252,30044363-30046138                       28   9.3  
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169...    28   9.3  
03_02_0504 - 8976973-8979414                                           28   9.3  
01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519     28   9.3  

>08_02_1247 +
           25578291-25578305,25579084-25579197,25579497-25579628,
           25579726-25579854,25580024-25580421,25580503-25580602,
           25580734-25580793,25580881-25580967,25581058-25581186,
           25581260-25581559
          Length = 487

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 248 SWNRRSHAYRGNATCSLLYMSAANYLLSSKPITIEHSFIKCRSTLKP 388
           S N +S  Y G   C  +YM A  +  +SK +    S IK    + P
Sbjct: 228 SLNEKSEQYNGMIICPRIYMDAEKFEYASKMLETVRSLIKRLEKIDP 274


>04_04_1410 +
           33363784-33364086,33364221-33364280,33364388-33364464,
           33365032-33365089,33365179-33365262,33365358-33365394,
           33365855-33365924,33366655-33366849,33366947-33367039,
           33367187-33367418,33367515-33367598,33368205-33368301,
           33368510-33368577,33368662-33368739,33368823-33368945,
           33369059-33369172,33369288-33369368
          Length = 617

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +1

Query: 160 ADQTC-HVDMDESGT----VDGDEAGVNAEALPDVVEPTKSRLQR*CNMFFIVH 306
           +D++C H++ D SGT      GD  GV +E   + VE  +  L    + FF VH
Sbjct: 309 SDRSCIHLEFDISGTGLVYETGDHVGVYSENAIETVEQAEKLLDLSPDTFFSVH 362


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +1

Query: 67  TDVNDGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTV 204
           +D    A+ S++D  +D  N S   NG+ ++  ++CH D+++S  +
Sbjct: 315 SDSQVAANCSSED--IDPANESSTSNGNHSDVQESCHKDINDSSMI 358


>04_04_1012 - 30104401-30104955,30105066-30106841
          Length = 776

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 335 KPITIEHSFIKCRSTLKPYTNKIDC 409
           +PI +EH+F + +S L P T+   C
Sbjct: 524 EPIPVEHAFARIKSALPPPTSTTTC 548


>04_04_1005 - 30043698-30044252,30044363-30046138
          Length = 776

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 335 KPITIEHSFIKCRSTLKPYTNKIDC 409
           +PI +EH+F + +S L P T+   C
Sbjct: 524 EPIPVEHAFARIKSALPPPTSTTTC 548


>03_04_0058 -
           16915281-16915313,16915424-16915535,16915585-16916990,
           16919112-16919282
          Length = 573

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -3

Query: 261 RRFHDVGQSFRIDSSFITIDSATLVHIDMASLVCLCQIAIMHFRTIYKINFAILV 97
           RR+H +G  + +D     I+SA +VH +  ++    ++AI  ++ I++   AI V
Sbjct: 479 RRWHVLGLGYDVDIDDRLIESAAVVHYN-GNMKPWLKLAIRRYKYIWERKSAITV 532


>03_02_0504 - 8976973-8979414
          Length = 813

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 335 KPITIEHSFIKCRSTLKPYTNKIDC 409
           +PI +EH+F + +S L P T+   C
Sbjct: 524 EPIPVEHAFARIKSALPPPTSTTTC 548


>01_05_0121 - 18361285-18361560,18361828-18362073,18362331-18362519
          Length = 236

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = +1

Query: 55  DIEPTDVNDGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDGDEAGVNAE 234
           D+E    NDG  H+++D ++D  N +   NG   +  + C  +   + T + DE   +A 
Sbjct: 152 DVETVVANDGIAHNDKDIEIDGSNGTANTNG-TGKGIEICGNNGTIANTGNEDEICSDAS 210

Query: 235 ALPDVVEPTK 264
              +++  T+
Sbjct: 211 KNKEILSSTR 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,884
Number of Sequences: 37544
Number of extensions: 354417
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)