Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0896
(761 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 36 0.047
SB_50257| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14) 29 3.1
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0) 29 5.5
SB_20000| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_30971| Best HMM Match : Y_Y_Y (HMM E-Value=0.28) 28 7.2
SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038) 28 7.2
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8) 28 7.2
SB_53464| Best HMM Match : HET (HMM E-Value=1.9) 28 9.5
SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95) 28 9.5
SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0) 28 9.5
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 35.5 bits (78), Expect = 0.047
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -2
Query: 160 PLPNRHY-AFPNNL*DQLCYPG*SDEHHHSRL*VRCL-CGDGRATYHKGTHSLD 5
P PN Y AFPN Q C P D +H + + C CG G + H G+ S +
Sbjct: 3593 PCPNGTYNAFPNASSSQHCRPCAKDHFNHKQAQIACFKCGTGASAPHLGSASCE 3646
>SB_50257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -3
Query: 432 IDFNK-RGLQSILLVYGLSVERHFINECSIVIGFDESK*LAADMYNKEHVALPL*A*LRR 256
IDFNK G S + V G + R+ N C + +E + +D+ A+P+ A R+
Sbjct: 59 IDFNKLHGENSYIKVPGNGITRYLFNLCQPIRNTEEKQCEGSDLCKITSSAIPMTAKDRK 118
Query: 255 -FHDVGQSFRIDSSF 214
F++ R+D ++
Sbjct: 119 LFYEGRFGNRVDQTY 133
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 49 HIDIEPTDVNDGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDGDEAG 222
+ID + ND + N D+ D N + +G++ + D ++D D+ GT+D D+ G
Sbjct: 43 NIDNDDDGNNDNDDNGNIDNDDD-DNINNDDDGNI-DNDDDGNIDNDDDGTIDNDDDG 98
>SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)
Length = 644
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -3
Query: 432 IDFNK-RGLQSILLVYGLSVERHFINECSIVIGFDESK*LAADMYNKEHVALPL*A*LRR 256
IDFNK G S + V G + R+ N C + +E + +D+ A+P+ A R+
Sbjct: 567 IDFNKLHGENSYIKVPGNGITRYLFNLCQPIRNTEEKQCEGSDLCKITSSAIPMTAKDRK 626
Query: 255 -FHDVGQSFRIDSSF 214
F++ R+D ++
Sbjct: 627 LFYEGRFGNRVDQTY 641
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 49 HIDIEPTDVNDGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDGDEAG 222
+ID + ND + N D+ D N + +G++ + D ++D D+ GT+D D+ G
Sbjct: 26 NIDNDDDGNNDNDDNGNIDNDDD-DNINNDDDGNI-DNDDDGNIDNDDDGTIDNDDDG 81
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 76 NDGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDGDEAG 222
+DG ++ D VD ++ N D H+D D+ G +D D+ G
Sbjct: 71 DDGTIDNDDDGYVDNVDDDNFDN------DDDGHIDNDDDGNIDNDDDG 113
>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
Length = 576
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 79 DGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDGDEAGVN 228
DG + D + I ++ +GD +D C+ D + + DGD +G+N
Sbjct: 132 DGDDSGDDDDDIGDIESNDSGDGDDGGSDDQCNDDSGDDDSGDGD-SGIN 180
>SB_20000| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 230 RKLCPTSWNRRSHAYRGNATCSLLYMSAANYLLSSKPITIEHSFIKC-RSTLKPYTNKID 406
RK NR++H A C+ + ++ +++ +KC R T + YT
Sbjct: 109 RKYTVAKCNRKTHRKYTVAKCNRKTHRKYTVVKCNRKTHRKYTVVKCNRKTHRKYT-VAK 167
Query: 407 CNPRLLKSMKS 439
CN ++LK++KS
Sbjct: 168 CNRKILKNVKS 178
>SB_55025| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2468
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 79 DGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDGDE 216
+G HHS+ D++ ++ E G E D H D + G D ++
Sbjct: 385 EGNHHSDSDNEETMVITFEADGGHPDEQDDNQHQDEVDGGHDDDED 430
>SB_30971| Best HMM Match : Y_Y_Y (HMM E-Value=0.28)
Length = 290
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 55 DIEPTDVNDGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDG 210
D+ +++ A+ S + CS ++N D + VD+D GT DG
Sbjct: 106 DVVVIKLSNSANISTVTPDLTFTTCSGVNNNDNIRLATSADVDIDSWGTTDG 157
>SB_56919| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00038)
Length = 459
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 107 LSWLE**APSFTSVGSMSMWRWPGH 33
++WL PSF + MW+WPG+
Sbjct: 425 MAWL----PSFVDMAGEHMWKWPGY 445
>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
Length = 347
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -3
Query: 195 TLVHIDMASLVCLCQ----IAIMHFRTIYKINFAILVRVMSTIIHVCRFDVY 52
T+VH + + C I I+H ++ IN + V+ TI+H C F +Y
Sbjct: 192 TIVHARLFMIYAYCSLFVFITIVH-ACLFMINAYCSLFVLITIVHACLFMIY 242
>SB_53464| Best HMM Match : HET (HMM E-Value=1.9)
Length = 251
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 58 IEPTDVNDGAHHSNQDSKVDLINCSEMHN--GDLAEADQTCHVD-MDESGTVD-GDEAGV 225
++P++ + SNQ ++VDL N N D+ ++Q VD ++ V+ DE
Sbjct: 175 VDPSNQENDVETSNQQNEVDLSNQQSNVNQKNDVGFSNQQNDVDPSNQQNNVNFCDEQHD 234
Query: 226 NAEAL-PDVVEPTKSR 270
N ++ P ++EPT +
Sbjct: 235 NETSIKPKIIEPTNRK 250
>SB_16516| Best HMM Match : SDA1 (HMM E-Value=0.95)
Length = 1656
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 79 DGAHHSNQDSKVDLINCSEMHNGDLAEADQTCHVDMDESGTVDGDE 216
D H +DS NC + N D + D + D D+ D DE
Sbjct: 1205 DADHEDKEDSGDQDNNCDDTENQDKDDDDDSKDDDKDDDKDEDADE 1250
>SB_8145| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=0)
Length = 893
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 243 RRRGTDEVTPTEVMQHVLYCTCLPLITYSHQNQ*QLNTH 359
RR T T E+ L C LI Y H NQ NT+
Sbjct: 92 RRNTTWSTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTY 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,214,411
Number of Sequences: 59808
Number of extensions: 432252
Number of successful extensions: 993
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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