Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0896
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein ...    29   3.4  
At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati...    29   3.4  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    29   4.5  
At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger) fa...    28   5.9  

>At5g20350.1 68418.m02421 zinc finger (DHHC type) family protein /
           ankyrin repeat family protein similar to patsas protein
           [Drosophila melanogaster] GI:6002770; contains Pfam
           profiles PF00023: Ankyrin repeat, PF01529: DHHC zinc
           finger domain
          Length = 592

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 40  GHLHIDIEPTDVNDGAHHSNQDSKVDLINCSEMHN 144
           GH+ ID+ PT       H++Q + V   NCS  HN
Sbjct: 538 GHVAIDVNPT-------HNSQSAHVHSANCSHSHN 565


>At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative
           / NADPH-ferrihemoprotein reductase, putative similar to
           NADPH-ferrihemoprotein reductase NADPH-cytochrome P450
           oxydoreductase isoform 1 [Populus balsamifera subsp.
           trichocarpa x Populus deltoides] GI:13183562, SP|P37116
           NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR)
           [Vigna radiata] {Phaseolus aureus}
          Length = 692

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = +1

Query: 109 KVDLINCSEMHNGDLAEADQTC-HVDMDESGT----VDGDEAGVNAEALPDVVEPTKSRL 273
           +VD+    E+H     E+D++C H++ D S T      GD  GV AE   ++VE     L
Sbjct: 294 RVDVAVQKELHTH---ESDRSCIHLEFDISRTGITYETGDHVGVYAENHVEIVEEAGKLL 350

Query: 274 QR*CNMFFIVH 306
               ++ F +H
Sbjct: 351 GHSLDLVFSIH 361


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 242 PTSWNRRSHAYRGNATCSLLYMSAANYLLSSKPITIEHSFIKCRS 376
           P  +NR   A RG   C     +A N LL +KPI      + C+S
Sbjct: 222 PPKFNRSLVAVRGTVYCKSCKYAAFNTLLGAKPIEGATVKLVCKS 266


>At5g07225.1 68418.m00824 zinc finger (C3HC4-type RING finger)
           family protein similar to SP:O54965 RING finger protein
           13 {Mus musculus} RING zinc finger protein
          Length = 234

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 243 RRRGTDEVTPTEVMQHVLYCTCLPLITYSHQNQ*QLNTH 359
           R RG    +P  V+ +       P+ITY HQNQ  ++TH
Sbjct: 29  RERGRVNNSPVHVLDNS------PMITYHHQNQPTMSTH 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,213,443
Number of Sequences: 28952
Number of extensions: 294013
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)