Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0893
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.1  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.0  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    27   2.6  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    25   8.0  

>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 347 GRTLCPHDAGSDIRRESPPTVQLTTSS 427
           GR++ P D G   R +SP T++  T S
Sbjct: 392 GRSILPADVGCRCRGDSPDTIEFPTDS 418


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 371 AGSDIRRESPPTVQLTTSSSANVSVRHKTEEGRRFLHRTGQG 496
           A S  R ES P VQ++ +   N+S   + +        TGQG
Sbjct: 123 ANSSSRTESEPNVQISDTDFDNISTEPRNQTTSPLDLETGQG 164


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 528 LGELGFTSPHLPCPVLCRNLRPSSVLC 448
           L  LG T+    CPV  R + P+ V+C
Sbjct: 231 LSALGTTAATQKCPVCRRKVHPNKVIC 257


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 336 SIKK*SSVCSTNGSSHEDTPFCC 268
           S+ + SS CS   SS  + P CC
Sbjct: 218 SVNEGSSCCSKKDSSPSEKPSCC 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,533
Number of Sequences: 5004
Number of extensions: 51779
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)