Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0893
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593...    33   0.12 
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740...    31   0.66 
10_01_0358 - 3941313-3941328,3942374-3942693,3942774-3942912,394...    30   1.5  
02_04_0575 - 24000191-24000302,24000710-24000788,24001017-240011...    29   2.0  
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722           29   2.7  
09_06_0256 + 21887666-21888670                                         29   3.5  
01_06_1322 - 36290275-36291693,36291837-36291954,36292485-36292516     28   6.2  
01_06_0751 + 31690411-31690443,31692900-31694240                       28   6.2  
11_02_0083 - 8116997-8117590,8118342-8118745,8119073-8119671,812...    27   8.2  

>04_04_0385 -
           24858580-24858721,24858772-24858850,24859155-24859302,
           24859939-24860239,24860327-24860407,24860727-24860875,
           24861073-24861215,24861404-24861556,24861664-24861742,
           24861851-24861916
          Length = 446

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 390 ERVLQLYS*RRPVALTYPYDIKLKRVEDFYIELGKVNEV 506
           + +++    R   A  +PY++KL+ V+ F+ + GKVN V
Sbjct: 113 DEIMEQVDSRTIAASPFPYNVKLEDVQSFFAQYGKVNSV 151


>04_04_0051 -
           22371490-22371658,22372333-22372778,22373880-22374054,
           22374134-22374240,22374358-22374646,22374942-22375075,
           22375228-22375423,22375611-22375719,22375839-22375965
          Length = 583

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 489 PVLCRNLRPSSVLCRTDTLALLDVVSC-TVGGLSLLMSEP 373
           PV  + LR SS  C   ++ +LDV SC  VG L L++  P
Sbjct: 170 PVYLKELRESSQNCEPHSIRVLDVPSCIAVGLLGLIVDIP 209


>10_01_0358 -
           3941313-3941328,3942374-3942693,3942774-3942912,
           3943441-3943543,3944745-3944890,3944941-3945314,
           3946416-3946512,3947118-3947566
          Length = 547

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 237 TSDHPLSLRPHNR-KACPHGNSRWCYRQT 320
           TS   +++ PH R K CP G S+W   QT
Sbjct: 375 TSRSVIAISPHGRWKVCPSGMSKWYIAQT 403


>02_04_0575 -
           24000191-24000302,24000710-24000788,24001017-24001164,
           24001704-24002100,24002188-24002268,24002688-24002836,
           24003152-24003294,24003643-24003795,24003912-24003990,
           24004113-24004175
          Length = 467

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 390 ERVLQLYS*RRPVALTYPYDIKLKRVEDFYIELGKVNEV 506
           + +++    R   A   PY++KL+ V+ F+ +  KVN V
Sbjct: 112 DEIIKQVDSRTVAASPLPYNVKLEDVQSFFAQYAKVNSV 150


>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
          Length = 1155

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 519  LGFTSPHLPCPVLCRNLRPSSVLCRTDTLA 430
            L +   H PCP++  +L+PS++L   D +A
Sbjct: 963  LEYLHQHKPCPIVHCDLKPSNILLDNDMVA 992


>09_06_0256 + 21887666-21888670
          Length = 334

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 368 DAGSDIRRESPPTVQLTTSSSANVSVRHKTEEGRRFLHRTGQGK*GDVNPSSPR 529
           D  S +    P  +    S+ AN S++ K ++     H  G+    DVN SSPR
Sbjct: 164 DFVSQLADAGPGALSELVSAYANGSIQEKLDKVENSGHVEGRAAESDVNVSSPR 217


>01_06_1322 - 36290275-36291693,36291837-36291954,36292485-36292516
          Length = 522

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 492 CPVLCRNLRPSSVLCRTDTLALLDVVSCTVGGLSL 388
           CP++   LRPS      D   LLD  + TVGG  L
Sbjct: 342 CPII--GLRPSGQKAAIDWRKLLDAPASTVGGAGL 374


>01_06_0751 + 31690411-31690443,31692900-31694240
          Length = 457

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 563 SKGFDRKKSNSTLASSGLHHLIYLAQFYVEIFDPLQFY 450
           SKG D   SN T ++S LH+L+   +   +  + LQ Y
Sbjct: 43  SKGLDPWTSNPTASASTLHYLLQEKERAQQAHEQLQIY 80


>11_02_0083 -
           8116997-8117590,8118342-8118745,8119073-8119671,
           8120226-8120266
          Length = 545

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 165 DFTEDSDKLLGFPTRVHVTT 224
           DFT+ S+KLLG P   HV T
Sbjct: 179 DFTDVSEKLLGIPGSSHVGT 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,369,938
Number of Sequences: 37544
Number of extensions: 341903
Number of successful extensions: 835
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)