Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0893
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 30   1.2  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      27   8.4  

>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 30/93 (32%), Positives = 44/93 (47%)
 Frame = +3

Query: 21   SALSPT*RGSDRILGSILAPGITDVHQR*YNYDTWINLQVNNTIEQILDFTEDSDKLLGF 200
            S  + T R  DR L ++LA  I+ V  R    DT + +QVNNT+E  +    D D L   
Sbjct: 1180 SRAAATERDLDRAL-AVLAGDISRVFNR--TRDT-LRVQVNNTLEVGVRVAADHDMLREH 1235

Query: 201  PTRVHVTTNSTLTSDHPLSLRPHNRKACPHGNS 299
             T+V     S  ++ H  S+R    +   H N+
Sbjct: 1236 VTKVAAHVRSGYSTLHD-SVRAKINRLLQHVNN 1267


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 522 ELGFTSPHLPCPVLCRNLRPSSVLCRTDTLALLDVVSC 409
           EL   SP+LP P  C  +   SV C  +TL   +  +C
Sbjct: 686 ELTLGSPYLPSPGECSVMSCLSVFCAKETLTGKNKFAC 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,057,458
Number of Sequences: 59808
Number of extensions: 412361
Number of successful extensions: 1096
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)