Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0893
         (580 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117222-1|AAI17223.1|  832|Homo sapiens SIDT1 protein protein.        40   0.006
AK000181-1|BAA90994.1|  827|Homo sapiens protein ( Homo sapiens ...    40   0.006

>BC117222-1|AAI17223.1|  832|Homo sapiens SIDT1 protein protein.
          Length = 832

 Score = 39.9 bits (89), Expect = 0.006
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
 Frame = +2

Query: 254 IITATQQKGVSSWELPLVLQ-TDDYFLMLNDMGRTLCPHDAGSDIRRESPPTVQL---TT 421
           ++   QQK V SW++PL+ Q          ++ RTLCP    S+   E+ P  QL     
Sbjct: 94  LVVVRQQKEVLSWQVPLLFQGLYQRSYNYQEVSRTLCP----SEATNETGPLQQLIFVDV 149

Query: 422 SSSANVSVRHK--TEEGRRFLHRTGQGK*GDVNPSSPRYYYFSFDQN 556
           +S A +  ++K    + + F  RT        +PS P+Y+ + F ++
Sbjct: 150 ASMAPLGAQYKLLVTKLKHFQLRTNVAFHFTASPSQPQYFLYKFPKD 196


>AK000181-1|BAA90994.1|  827|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20174 fis, clone COL09863. ).
          Length = 827

 Score = 39.9 bits (89), Expect = 0.006
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
 Frame = +2

Query: 254 IITATQQKGVSSWELPLVLQ-TDDYFLMLNDMGRTLCPHDAGSDIRRESPPTVQL---TT 421
           ++   QQK V SW++PL+ Q          ++ RTLCP    S+   E+ P  QL     
Sbjct: 94  LVVVRQQKEVLSWQVPLLFQGLYQRSYNYQEVSRTLCP----SEATNETGPLQQLIFVDV 149

Query: 422 SSSANVSVRHK--TEEGRRFLHRTGQGK*GDVNPSSPRYYYFSFDQN 556
           +S A +  ++K    + + F  RT        +PS P+Y+ + F ++
Sbjct: 150 ASMAPLGAQYKLLVTKLKHFQLRTNVAFHFTASPSQPQYFLYKFPKD 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,081,744
Number of Sequences: 237096
Number of extensions: 1936872
Number of successful extensions: 7143
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7143
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)