Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0893
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U39646-7|AAA80371.1|  623|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U42844-4|ABM01868.1|  739|Caenorhabditis elegans Hypothetical
           protein C08A9.3 protein.
          Length = 739

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/65 (26%), Positives = 33/65 (50%)
 Frame = +2

Query: 353 TLCPHDAGSDIRRESPPTVQLTTSSSANVSVRHKTEEGRRFLHRTGQGK*GDVNPSSPRY 532
           TLC  D  ++ +   P  + + +S  +  ++R K+       ++T + K    +PS PRY
Sbjct: 106 TLCDEDRSAE-QLSQPVQISIASSLPSLFNLRVKSVNNFIIGNKTFKSK---GSPSEPRY 161

Query: 533 YYFSF 547
           Y ++F
Sbjct: 162 YMYTF 166


>U39646-7|AAA80371.1|  623|Caenorhabditis elegans Hypothetical
           protein F47B7.2a protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 75  APGITDVHQR*YNYDTWINLQVNNTIEQILDFTEDSDKLLGFPTRVHVT 221
           APG T + +  +  D WI LQ   T  + +   ++  + LG P    +T
Sbjct: 355 APGTTPMRRLFFRLDEWIQLQSVVTANEWITKVDEIQQALGNPLPKEIT 403


>U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical
           protein F47B7.2c protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 75  APGITDVHQR*YNYDTWINLQVNNTIEQILDFTEDSDKLLGFPTRVHVT 221
           APG T + +  +  D WI LQ   T  + +   ++  + LG P    +T
Sbjct: 355 APGTTPMRRLFFRLDEWIQLQSVVTANEWITKVDEIQQALGNPLPKEIT 403


>U39646-5|AAK72057.1|  678|Caenorhabditis elegans Hypothetical
           protein F47B7.2b protein.
          Length = 678

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 75  APGITDVHQR*YNYDTWINLQVNNTIEQILDFTEDSDKLLGFPTRVHVT 221
           APG T + +  +  D WI LQ   T  + +   ++  + LG P    +T
Sbjct: 355 APGTTPMRRLFFRLDEWIQLQSVVTANEWITKVDEIQQALGNPLPKEIT 403


>Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical
           protein R17.1 protein.
          Length = 286

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 531 YLGELGFTSPHLPCPVLCRNLRPSSVLCRTDTLALLDVVSCTVGGLSLLMSE 376
           YL  + F S      V   NLR ++++    T+  +DV   T+  LS  +SE
Sbjct: 25  YLVSISFNSKFAKSIVESLNLRANNIILTMSTIISIDVQLNTLESLSFKVSE 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,102
Number of Sequences: 27780
Number of extensions: 293212
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)