Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0893
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 229 VHSQVIILYHYGHTTERRVLMGTPVGATDR 318
           +HS  ++    GH   R  L G  V  T R
Sbjct: 514 IHSGEVVTGVIGHRMPRYCLFGNTVNLTSR 543


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 229 VHSQVIILYHYGHTTERRVLMGTPVGATDR 318
           +HS  ++    GH   R  L G  V  T R
Sbjct: 514 IHSGEVVTGVIGHRMPRYCLFGNTVNLTSR 543


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 457 SFMSYGYVSATGRRQLY 407
           +   YGYVS   +R +Y
Sbjct: 660 NIFKYGYVSHANQRNMY 676


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,529
Number of Sequences: 438
Number of extensions: 4008
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)