Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0893
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ...    31   0.56 
At2g04280.1 68415.m00420 expressed protein                             31   0.56 
At4g27870.1 68417.m04001 integral membrane family protein contai...    29   2.2  
At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam pr...    29   3.0  
At3g23000.1 68416.m02900 CBL-interacting protein kinase 7 (CIPK7...    28   3.9  
At4g12420.1 68417.m01964 multi-copper oxidase, putative (SKU5) i...    27   6.8  
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-...    27   9.0  
At1g14270.1 68414.m01692 CAAX amino terminal protease family pro...    27   9.0  

>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
           protein RNA-binding protein LAH1, Saccharomyces
           cerevisiae, PIR2:B48600; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 433

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 390 ERVLQLYS*RRPVALTYPYDIKLKRVEDFYIELGKVNEV 506
           E +++  + R   A  + YD+K + VE F+ + GKVN V
Sbjct: 107 EDLIEQLNARTVAASPFSYDVKREDVESFFSQYGKVNSV 145


>At2g04280.1 68415.m00420 expressed protein
          Length = 568

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +2

Query: 389 RESPPTVQLTTSSSANVS-VRHKTEEGRRFLHRTGQGK*GDVNPSSPRY-YYFSFD-QNP 559
           +E  P ++  TS SA +S ++ K EEGR     T +G+    NP   +Y  +F +D ++ 
Sbjct: 445 KEVWPNLEADTSPSALLSTLQDKVEEGRHLYIATNEGELSFFNPLKDKYATHFLYDYKDL 504

Query: 560 WNVS 571
           W+ S
Sbjct: 505 WDES 508


>At4g27870.1 68417.m04001 integral membrane family protein contains
           Pfam PF01988: Integral membrane protein
          Length = 761

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +2

Query: 278 GVSSWELPLVLQTDDYFLMLNDMGRTLCPHDAGSDIRRESPPTVQLTTSSSANVSVRHKT 457
           G      P+ ++ DD  ++  D+ R    H  G D   +S      ++SSS++ S    T
Sbjct: 13  GTEKLHQPIEVEEDDEQIV--DLERKTFRHGKGHDTSVDSSTITNTSSSSSSSFSGDGGT 70

Query: 458 EEGRRFLHRTGQGK*GDV 511
           EE   F H  G G+  D+
Sbjct: 71  EETPDF-HSNGDGEHTDL 87


>At1g70610.1 68414.m08135 ABC transporter (TAP1) contains Pfam
           profile: PF00005 ABC transporters; similar to TAP1
           protein (transporter of processed antigen) GB:AAD53033
           (Oncorhynchus mykiss); identical to cDNA transporter
           associated with antigen processing-like protein (TAP1)
           GI:19335721
          Length = 700

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 19  FRP*AQHKGALIEYLVVSWHLALLTSISDDIITTLGLIY 135
           FR   Q  GALI  L++SW L L T +   I+  +  +Y
Sbjct: 258 FRNVLQGTGALIYLLILSWPLGLCTLVICCILAAVMFVY 296


>At3g23000.1 68416.m02900 CBL-interacting protein kinase 7 (CIPK7)
           identical to CBL-interacting protein kinase 7
           [Arabidopsis thaliana] gi|13249113|gb|AAK16682; contains
           Pfam profiles PF00069: Protein kinase domain and
           PF03822: NAF domain; identical to cDNA CBL-interacting
           protein kinase 7 (CIPK7) GI:13249112
          Length = 429

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 93  VHQR*YNYDTWINLQVNNTIEQILD 167
           +H+R Y + +WI+ Q  + I Q+LD
Sbjct: 238 IHRRDYRFPSWISKQAKSIIYQMLD 262


>At4g12420.1 68417.m01964 multi-copper oxidase, putative (SKU5)
           identical to multi-copper oxidase-related protein
           (SKU5)(GI:18158154) [Arabidopsis thaliana]; similar to
           pollen-specific protein precursor - common tobacco,
           PIR2:S22495; contains Pfam profile: PF00394 Multicopper
           oxidase
          Length = 587

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 401 PTVQLTTSSSANVSVRHKTEEGRRFLHRTG 490
           PT+ +TT+ +  V+VR+K +EG   LH  G
Sbjct: 55  PTINVTTNENLVVNVRNKLDEG-LLLHWNG 83


>At5g53170.1 68418.m06610 FtsH protease, putative similar to
           ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
           musculus]
          Length = 806

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = -3

Query: 416 SAVQLEDSLFLCLNLHREGTKSCPCRLASRSNRLSVAPTGVPMRTRLSVV 267
           S+  L+ SLFL   LH    K  PC  +S S  LS  P  +    RLS V
Sbjct: 2   SSSTLQASLFLRPPLHTSSFKLYPCLFSSSS--LSFCPQSLSSFYRLSSV 49


>At1g14270.1 68414.m01692 CAAX amino terminal protease family
           protein contains Pfam profile PF02517: CAAX amino
           terminal protease family
          Length = 353

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 462 SSVLCRTDTLALLDVVSCTVGGLS 391
           SS+LC +D+  L+   +CT GGLS
Sbjct: 26  SSLLCLSDSRRLILPKTCTYGGLS 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,418
Number of Sequences: 28952
Number of extensions: 277773
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)