Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0892
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.31 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   2.9  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   3.9  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   5.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.1  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 516 TVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASARDTAQDSLQTT 695
           TVSS+   T S + TAA +  +   +A  NT S   S+  +S   +++   TA  +  T 
Sbjct: 248 TVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTP 307

Query: 696 LKFV 707
           L  V
Sbjct: 308 LTSV 311


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +3

Query: 477 QEGCRVRNKHSKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSK 644
           +  C VR +   + ++ST+E  K+   +  E  + Y++   EN  S++ +  +T +
Sbjct: 639 RHNCTVRVESPVNELNSTMEEVKNVWNSQGEILRLYLEITPENELSSSLTHQNTGE 694


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 468 RQYQE-GCRVRNKHSKDTV----SSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAF 632
           R YQE     RNK ++DT     + T+     ++ +++E     ++T   +  +   SAF
Sbjct: 402 RSYQELEFSKRNKDAEDTALEFRNRTILDEDLSSSSSSEDDDLDLNTEVPHV-ALGSSAF 460

Query: 633 DTSKTFAASARDTAQDSLQTTLK 701
              K+F  + RD A  +L T  K
Sbjct: 461 LMGKSFDLNLRDPAVQALHTKYK 483


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 495 RNKHSKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASARDTA 674
           + K SK + +S  E T+     + E   S +    +  KSA  SAF+     +++   T+
Sbjct: 85  KKKKSKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDATS 144

Query: 675 QDSLQT 692
             S QT
Sbjct: 145 DLSKQT 150


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 516  TVSSTLESTKSAA--QTAAETGKSYI-DTATENTKSAAQSAFDTSKTFAASARD 668
            T SST+ +  SAA   + A +G S +  +AT ++ S+A +  D+S T    + D
Sbjct: 1107 TASSTIAAAASAATLSSDAASGSSTVTSSATASSSSSAATTADSSVTTDTPSND 1160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,244
Number of Sequences: 5004
Number of extensions: 45550
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)