Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0892
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1112 + 30984925-30985101,30985204-30985851                       35   0.082
03_06_0485 + 34242121-34243188                                         35   0.082
03_02_0841 - 11669707-11670468                                         32   0.44 
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545...    29   3.1  
02_05_0850 + 32209798-32210086,32210779-32212316                       29   3.1  
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463...    29   4.1  
12_02_1032 + 25542420-25542573,25543511-25543577,25543816-255439...    29   5.4  
11_01_0511 + 3969874-3970269                                           29   5.4  
02_02_0280 - 8515894-8517309                                           29   5.4  
01_06_0422 - 29226526-29226672,29226771-29227211,29227325-29227384     29   5.4  
10_01_0047 - 656357-656766,657061-657226,657333-657515,657628-65...    28   7.1  
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615...    28   9.4  
03_01_0281 + 2160480-2162003                                           28   9.4  
02_03_0317 - 17659356-17659634,17660028-17660552,17660587-176606...    28   9.4  
02_03_0143 + 15685242-15686298,15688167-15688265,15688998-156890...    28   9.4  
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195...    28   9.4  
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940...    28   9.4  

>04_04_1112 + 30984925-30985101,30985204-30985851
          Length = 274

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +3

Query: 447 RYIVDHRRQYQEGCRVRNKHSKD-TVSSTLESTKSAAQTAAETGKSYIDTAT---ENTKS 614
           R + D   +  EG   R   +KD TV  T  + +  A+   E     ++TA    E  K 
Sbjct: 161 RAVRDKTAETAEGAMDRAGEAKDRTVEGTKHAGEKVAEMTKEGASKVVETAQAIGEKAKQ 220

Query: 615 AAQSAFDTSKTFAASARDT 671
           AAQ A+  +K  A   +DT
Sbjct: 221 AAQGAWGATKEAAQGVKDT 239


>03_06_0485 + 34242121-34243188
          Length = 355

 Score = 34.7 bits (76), Expect = 0.082
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = +3

Query: 483 GCRVRNKHSKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSA 629
           GCR RNK +K + SS+  S   +A     T  S   TAT  + SAA +A
Sbjct: 107 GCR-RNKRTKSSKSSSSTSAAGSASATGGTSSSTSSTATGGSSSAAAAA 154


>03_02_0841 - 11669707-11670468
          Length = 253

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 471 QYQEGCRVRNKHSKDTVSSTLESTKSAAQ-TAAETGKSYIDTATENTKSAAQSAFDTSKT 647
           +Y++    + + +KDT +      K   + TA ET  +  DTA    + A  +  DT++T
Sbjct: 180 EYKDALARKTRDAKDTTAQKATEFKDGVKATAQETRDATADTA----RKAKDATKDTTQT 235

Query: 648 FAASARDTA 674
            A  AR+TA
Sbjct: 236 AADKARETA 244



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
 Frame = +3

Query: 441 YKRYIVDHRRQYQEGCRVRNKHSKDTVSSTL--------ESTKSAAQTAAETGKSYIDTA 596
           YK Y  D  R+ ++    +   + +   + L          T+ A  T A+    + D  
Sbjct: 148 YKDYTADKTRETKDAVAQKASDASEATKNKLGEYKDALARKTRDAKDTTAQKATEFKD-- 205

Query: 597 TENTKSAAQSAFDTSKTFAASARDTAQDSLQT 692
               K+ AQ   D +   A  A+D  +D+ QT
Sbjct: 206 --GVKATAQETRDATADTARKAKDATKDTTQT 235


>11_04_0014 -
           12253341-12253358,12253520-12253729,12254388-12254523,
           12254631-12254752,12254789-12254842,12254872-12255161,
           12255737-12255948,12256008-12256475,12256560-12256856,
           12257467-12258329,12258417-12258490,12258616-12258650,
           12259024-12259087,12259452-12259733,12259870-12259946,
           12260045-12260325
          Length = 1160

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 444 CSVKDLLPISYGFVGGVRSISCCKRHLRKFLVDGVDCGVLCI 319
           C    L+PI+  FV   R   C K+ LR+  + GVD  +LC+
Sbjct: 818 CQCLSLMPIASLFVVSFR---CGKQRLREARIQGVDYLILCL 856


>02_05_0850 + 32209798-32210086,32210779-32212316
          Length = 608

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/52 (40%), Positives = 27/52 (51%)
 Frame = +1

Query: 586 STLPQRTRNRRPNPHSIQARRLRLALEIQRRIRCKQH*NSYVSAAYSAIDIG 741
           S L +R   RRP+PH +   RLR+  E+QR  RC  +  SY  A     D G
Sbjct: 133 SYLYRRNPGRRPSPHLV--ARLRMHEELQR--RCGPNTESYNRAVQRLRDGG 180


>03_05_0095 -
           20745639-20745785,20745880-20746065,20746286-20746348,
           20747255-20747331,20748692-20749121
          Length = 300

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +2

Query: 254 RRRASLLVEPRNPPTMLLAQLPMQSTPQSTPSTRNFRRCRLQQEMLRTPP 403
           R+R   L+    PP     + P Q    S+PS +   RCRL   M R PP
Sbjct: 41  RKRCHFLLPRLCPPQSSGLEAPPQIKRPSSPSGQG--RCRLSTVMSRVPP 88


>12_02_1032 +
           25542420-25542573,25543511-25543577,25543816-25543918,
           25544435-25544505,25544639-25544702,25545260-25545316,
           25545435-25545593,25545967-25546035,25546111-25546202,
           25546579-25546657,25546923-25547088,25547480-25547604,
           25547737-25548078,25548271-25548432,25548520-25548624,
           25548766-25548860,25548948-25549044,25549848-25550165,
           25550228-25550296
          Length = 797

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +3

Query: 450 YIVD-HRRQYQEGCRVRNKHSKDTVSSTLES-TKSAAQTAAETGKSYIDT-ATENTKSAA 620
           YIVD H ++Y +     ++  +      L+S   +  Q A +   +++ T A E  K+  
Sbjct: 271 YIVDVHMQEYDKEAIYFDEAVRTAKRQLLKSRVLNLVQPAFQKMLAHLRTRALEKYKTEL 330

Query: 621 QSAFDTSKTFAASARDTAQDSL 686
               ++ K FAA+ RDT + +L
Sbjct: 331 NLTLESGKGFAAAVRDTTESNL 352


>11_01_0511 + 3969874-3970269
          Length = 131

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 559 PRRKPENRTSTLPQRTRNRRPNPHSIQARR 648
           P R+   R  +LP+    RR  PH + ARR
Sbjct: 25  PTREATEREKSLPRSVTRRRRRPHLLPARR 54


>02_02_0280 - 8515894-8517309
          Length = 471

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 549 AAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASARDTAQDSLQTT 695
           AAQ A E  K    TAT+  + AA  A D + +   +A +  +D   +T
Sbjct: 175 AAQAATEKAKVAAGTATDYARQAAAKAKDVTLSTGGTAAEKTKDVALST 223



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +3

Query: 468 RQYQEGCRVRNKHSKDTVSSTLESTKSAAQTAA-ETGKSYIDTATENTKSAAQSAFDTSK 644
           R+   G     K +  T ++      +A  T A + G      ATE  K AA +A D ++
Sbjct: 136 REKSAGATHGAKQAGSTAATRAADYAAAKGTEAKDAGAHAAQAATEKAKVAAGTATDYAR 195

Query: 645 TFAASARD 668
             AA A+D
Sbjct: 196 QAAAKAKD 203


>01_06_0422 - 29226526-29226672,29226771-29227211,29227325-29227384
          Length = 215

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +3

Query: 507 SKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASARDTAQDSL 686
           +KD  + T +S    A+  A    SYI    E  K  A  A   +K  A + +D     L
Sbjct: 106 AKDRAADTAQSAADRARDGAGQTGSYIGQTAEAAKQKAAGAAQYAKETAIAGKDKTGAVL 165

Query: 687 Q 689
           Q
Sbjct: 166 Q 166


>10_01_0047 -
           656357-656766,657061-657226,657333-657515,657628-657849
          Length = 326

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/72 (23%), Positives = 26/72 (36%)
 Frame = +3

Query: 546 SAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASARDTAQDSLQTTLKFVCERCVF 725
           S   T      +        T S+A    D +      +     D  +TT+  +    VF
Sbjct: 190 SGGHTIGRARCTLFSNRLSTTSSSADPTLDATMAANLQSLCAGGDGNETTVLDITSAYVF 249

Query: 726 RYRYWQNLLGNR 761
             RY+QNLL  +
Sbjct: 250 DNRYYQNLLNQK 261


>07_01_0789 -
           6150257-6151046,6151167-6151390,6151816-6151991,
           6152778-6153801
          Length = 737

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 420 WEEGP*HYKRYIVDHRRQYQEGCRVRN-KHSKDTVSSTLESTKS 548
           WE+   H  +     RR+YQ+   V N K  +   SS+LE TKS
Sbjct: 391 WEKKLYHEVKDFEVIRREYQQKLAVLNKKKQRGVTSSSLEKTKS 434


>03_01_0281 + 2160480-2162003
          Length = 507

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +3

Query: 444 KRYIVDHRRQYQEGCRVRNKHSKDTVSST-LESTKSAAQTAAETGKSYIDTATENTKSAA 620
           +R  + + R   E  R  +    +T+     E  K  A  +A+   SYI+   E   +++
Sbjct: 232 RRLGIGYERTMAEALRACDHFVNETIEKRRAEKAKGEADGSADLLSSYINDDDEEENASS 291

Query: 621 QSAFDTSKTFAASARDTAQDSL 686
               DT+    ++ RD +  +L
Sbjct: 292 SFLRDTTMNLISAGRDASAMAL 313


>02_03_0317 -
           17659356-17659634,17660028-17660552,17660587-17660661,
           17661699-17662496
          Length = 558

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 99  INKTQKCSAESQAHFVASARRLHLSSTGRRRMQSNL 206
           I K  K +A S A   A++RRLHL      R+ S+L
Sbjct: 51  IRKQAKDAAASAAALAAASRRLHLDRARHLRLLSSL 86


>02_03_0143 +
           15685242-15686298,15688167-15688265,15688998-15689072,
           15689309-15689364,15689786-15689875
          Length = 458

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 565 RKPENRTST-LPQRTRNRRPNPHSIQARRLRLALEIQRRIRCKQH*NSYVS 714
           +KP +   T L  RTR+ + +   IQ + LRLAL++   I   Q  N Y S
Sbjct: 39  KKPVDSARTRLEGRTRDHKLDKLMIQLKNLRLALDLHELI--SQQRNKYAS 87


>02_01_0292 +
           1949926-1950037,1950121-1950250,1950551-1950616,
           1950718-1950789,1951198-1951607,1951789-1951994,
           1952121-1952407,1952527-1952665,1952746-1953141
          Length = 605

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 563 GGNRKIVHRHCHREHE-IGGPIRIR 634
           GG R++VH+H   EH  + G +R+R
Sbjct: 433 GGQRQVVHQHFRPEHVLVDGEMRVR 457


>01_06_0737 +
           31592562-31592786,31593314-31593541,31593981-31594054,
           31594595-31594754,31595979-31596098,31596185-31596293,
           31597447-31597628
          Length = 365

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 516 TVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFD 635
           +VS+T   TKS  Q  A   +  ID   E+T+SA +  FD
Sbjct: 202 SVSATC-GTKSIEQVLAAGAEKAIDYTAEDTESAVKGKFD 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,192,409
Number of Sequences: 37544
Number of extensions: 346302
Number of successful extensions: 1388
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)