Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0892
(764 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 31 1.3
SB_58939| Best HMM Match : Motile_Sperm (HMM E-Value=3.4) 30 1.8
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 30 2.3
SB_6997| Best HMM Match : COX3 (HMM E-Value=9.3) 30 2.3
SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44) 29 4.1
SB_56122| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 5.2
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 29 5.4
SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 7.2
SB_29376| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_4814| Best HMM Match : NTP_transf_2 (HMM E-Value=0.6) 28 7.2
SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_26414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 507 SKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASARDTAQ 677
+K T +++ + K A + + E GK +T+ K +++ DT+K ++ DTA+
Sbjct: 1677 TKVTPKASINTAKVALKVSTEAGKVTPKASTDAAKVTPKASTDTAKVTPKASTDTAK 1733
>SB_58939| Best HMM Match : Motile_Sperm (HMM E-Value=3.4)
Length = 368
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 498 NKHSKDTVSSTLESTKSAAQTAAETGKSYIDTATEN--TKSAAQSAFDTSKT 647
NKH+ VSS++ ++K++ + A +TG S ID T N T A S+ KT
Sbjct: 309 NKHTIKAVSSSVTASKTSERFATKTGSS-IDAPTGNKHTIKAVFSSVTAPKT 359
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -2
Query: 355 PCRWRRLRSAL--HRQLS*QHRWRISRLHQ 272
PCRWRR+ L H + QH R+ R HQ
Sbjct: 548 PCRWRRVLEVLLPHVRQGHQHPQRVPRRHQ 577
>SB_6997| Best HMM Match : COX3 (HMM E-Value=9.3)
Length = 195
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 645 SCLYRMRIGPPISCSL 598
SCL R IGPPI+CSL
Sbjct: 128 SCLLRETIGPPITCSL 143
>SB_18635| Best HMM Match : 7tm_1 (HMM E-Value=8.54792e-44)
Length = 350
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 230 RLPVPSRRQVALHPSSSCRREMQSSRRCYEM 138
R P R H +S+ RR+ QS R CY +
Sbjct: 291 RCQKPDLRSATRHTNSTIRRQSQSRRNCYSV 321
>SB_56122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 278 EPRNPPTMLLAQLPMQSTPQSTPSTRNF 361
+P+ PPT+ + L S S PSTRN+
Sbjct: 35 DPKRPPTLTKSSLSRDSHVISPPSTRNY 62
>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1922
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 496 AINTVKIQSVVHWRVLNRLLRPRRKPENRTSTLPQRTRNRRPNPH--SIQARRLRLALE 666
A T KI++ +W V L P +P TS +PQ + PNP I+ R+ LE
Sbjct: 1458 AATTAKIRAK-YWIVKGNKLTPYTQPFFHTSDVPQGPFRKTPNPRQSGIRPEDSRVLLE 1515
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 24.2 bits (50), Expect(2) = 5.2
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +1
Query: 502 NTVKIQSVVHWRVLNRLLRPRRKPENRTSTLPQRTRNRRPNPHSIQARRL 651
N +K +S LN+L + + + T + +PNP +Q +++
Sbjct: 2583 NNIKTESCTANEQLNKLSNQQTQQQQVMQTQAHAMQPSQPNPQQLQQQQI 2632
Score = 22.6 bits (46), Expect(2) = 5.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 442 TKDTLSTTADNTKKAAESAINTVKIQS 522
+KDT TTA N E I +V QS
Sbjct: 2535 SKDTSITTALNDSPTKEGTIESVSNQS 2561
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 171 SSTGRRRMQSNLPPRRHRKPPTL*KTRSEGG 263
S GRRR +S P RR R P ++RS G
Sbjct: 114 SPRGRRRSRSRSPVRRRRSPSLERRSRSRSG 144
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 556 RPRRKPENRTSTLPQRTRNRRPNPHSIQARRLRLALEIQRRIRCKQH*NSY 708
RP + E + + R P +Q +R RLAL+ QR +CKQ Y
Sbjct: 127 RPLPEKEGKKAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADY 177
>SB_44756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/78 (23%), Positives = 33/78 (42%)
Frame = +3
Query: 480 EGCRVRNKHSKDTVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAAS 659
E + + T ++ STK+A + + ++Y ATEN + A + T T S
Sbjct: 44 ENYSTKASENYSTKATEKYSTKAAENYSTKATENYSTKATENYSTKAAENYSTKATENYS 103
Query: 660 ARDTAQDSLQTTLKFVCE 713
+ T S + + + E
Sbjct: 104 TKATENYSTKASENYTTE 121
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 516 TVSSTLESTKSAAQTAAETGKSYIDTATENTKSAAQSAFDTSKTFAASARDTAQDSLQTT 695
T S STK+ + + + Y ATEN + A + T T S + + S + T
Sbjct: 179 TKSKENNSTKATENYSTKATEKYSTKATENFSTKATENYSTKATEKYSTKASENYSTKAT 238
Query: 696 LKF 704
K+
Sbjct: 239 EKY 241
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 627 AFDTSKTFAASARDTAQDSLQTTLKFVCERCVF 725
A+D KTFA+ A A +S +T +K+ C F
Sbjct: 912 AYDVMKTFASKAVLQASNSRKTFIKYCCAAFTF 944
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 529 HWRVLNRLLRPRRKPENRTSTLPQRTRNRRPNP-HSIQARRLRLALEIQRRIRCKQ 693
H R L + LR R+ + +R R RR H Q RRLR A I+R+I+ K+
Sbjct: 1205 HKRNLQKRLRRARRRRRLRKRIRRRRRQRRSRRYHRRQLRRLRRA--IRRKIQRKR 1258
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = +1
Query: 511 KIQSVVHWRVLNRLLRPRRKPENRTSTLPQRTRNRRPNPHSIQARRLRLALEIQRRIRCK 690
+IQ R++ R+ R RR+ + +R R RR RR R +RR+ CK
Sbjct: 2055 RIQLTRRRRIIRRVRRQRRRRRRQRRRRKRRRRRRR--------RRRRRTRRTRRRVSCK 2106
Query: 691 QH*NSYVSAAYSAIDI 738
+ ++ + I I
Sbjct: 2107 MRISDFIVITVTIIII 2122
>SB_29376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 187 EGCRATCRREGTGSRPRC 240
E C CR E GSRP+C
Sbjct: 116 EDCNQICRMEDDGSRPKC 133
>SB_4814| Best HMM Match : NTP_transf_2 (HMM E-Value=0.6)
Length = 426
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 644 LACIECGLGRRFRVLCGSVDV 582
L CI CG RR + CG VDV
Sbjct: 263 LLCITCGSYRRGKSTCGDVDV 283
>SB_10204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.9 bits (59), Expect = 9.5
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Frame = +3
Query: 438 HY--KRYIVDHRRQYQEGCR--VRNKHSKDTVSSTLE-----STKSAAQTAAETGKSYID 590
HY K+Y+V R Y+ N +K T S + + STK+ + + ++Y
Sbjct: 26 HYCQKQYLVSSRATYKRTITKATENYSTKATESYSTKAIENYSTKATENYSTKATENYST 85
Query: 591 TATENTKSAAQSAFDTSKTFAASARDTAQDSLQTT 695
ATEN + A + T T S + T S + T
Sbjct: 86 KATENYSTKAIENYSTKATENYSTKATENYSNKAT 120
>SB_26414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 3 SAVRS-RYC*SIEKFKRAGENYSVILINVLCFFINKTQKCSAESQAHFVAS 152
+A+RS R+C + K +GE Y + ++ + +KCS+ HF++S
Sbjct: 128 AAIRSDRHCIEKRRGKSSGEFYELSRLSDKMSIPSGERKCSSAEMLHFLSS 178
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 510 KDTVSSTLESTKSAAQTAAETGKSYIDTATENT-KSAAQSAFDTSKTFAASARDTA 674
K SSTL ST ++ E G +Y+D +T T + Q F+ + A + R A
Sbjct: 2232 KALASSTLPSTNVTWESVEEDGFAYLDLSTAGTILTPLQFTFEKASGRAKATRGCA 2287
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,812,369
Number of Sequences: 59808
Number of extensions: 392425
Number of successful extensions: 1455
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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