Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0891
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 201 1e-52
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 124 2e-29
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 99 9e-22
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 84 3e-17
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 83 5e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 71 3e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 71 3e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 67 3e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 66 6e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 66 7e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 63 5e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 61 2e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 58 1e-09
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 58 1e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 58 2e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 57 3e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 2e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 53 6e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 1e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 5e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 49 7e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 37 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.012
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.11
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 27 3.2
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 3.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.2
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 4.2
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 5.5
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 7.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 7.3
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 7.3
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 7.3
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 7.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 201 bits (490), Expect = 1e-52
Identities = 98/170 (57%), Positives = 118/170 (69%), Gaps = 1/170 (0%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAYQ-TGSGKTLAYILPAIVHINNQPPIRRGDGPI 615
K +G++ PTPIQ Q WP+AMSG+ + TGSGKTL+Y LPAIVHIN QP + GDGPI
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 616 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
LVLAPTRELA QIQQ FG +S +RNTCV+GG P+ Q RDL RGV+
Sbjct: 198 VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVE 247
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 756 GSKIVIATPGRLIDFLE 806
G +I IATPGRL+D L+
Sbjct: 245 GVEICIATPGRLLDMLD 261
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 124 bits (298), Expect = 2e-29
Identities = 61/172 (35%), Positives = 101/172 (58%), Gaps = 2/172 (1%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 432
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 433 GVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDG 609
+ ++GY++PT IQAQ P SG+ + +TGSGKT+A++LP HI +Q P++ G+G
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 610 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
PIA+++ PTRELA QI + F +R C +GGAP ++Q DL+RG +
Sbjct: 492 PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAE 543
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFL 803
L G++IV+ TPGR+ID L
Sbjct: 538 LKRGAEIVVCTPGRMIDVL 556
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 98.7 bits (235), Expect = 9e-22
Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Frame = +1
Query: 340 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA 519
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 520 Y-QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHT 687
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEP 351
Query: 688 SYVRNTCVFGGAPKREQARDLERG 759
R V GG EQ+ + +G
Sbjct: 352 LGFRCVSVVGGHAFEEQSFQMSQG 375
Score = 31.9 bits (69), Expect = 0.11
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLEK 809
+ +G+ IV+ATPGRL+D LE+
Sbjct: 372 MSQGAHIVVATPGRLLDCLER 392
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 83.8 bits (198), Expect = 3e-17
Identities = 48/121 (39%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILP 561
PI F+E + +++G+K YKEPTPIQA WP ++G+ + +TGSGKT+A+ +P
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 562 AIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA 741
A+ ++N + P LV++PTRELA Q + + ++ V+GGAPK EQA
Sbjct: 223 ALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA 280
Query: 742 R 744
R
Sbjct: 281 R 281
Score = 25.8 bits (54), Expect = 7.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 753 EGSKIVIATPGRLIDFLEKG 812
+ + ++I TPGRL+D + G
Sbjct: 284 KNASVIIGTPGRLLDLINDG 303
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 83.0 bits (196), Expect = 5e-17
Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 14/149 (9%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTG 531
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG+ +A QTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 532 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQVAA 672
SGKT ++ P + + + P P+ + G P L+LAPTREL QI + +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESR 276
Query: 673 DFGHTSYVRNTCVFGGAPKREQARDLERG 759
F + S+VR V+GGA R Q R +++G
Sbjct: 277 KFCYRSWVRPCAVYGGADIRAQIRQIDQG 305
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLEKG 812
+ +G ++ ATPGRL+D +++G
Sbjct: 302 IDQGCDLLSATPGRLVDLIDRG 323
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 70.5 bits (165), Expect = 3e-13
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--I*LAYQTGSGKTLAYILPAIV 570
F+E D + + + +G+K PTPIQ + P+ ++ + I LA QTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLA-QTGSGKTAAFALPVIQ 106
Query: 571 HI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 747
+ NN P A+VLAPTRELA QI + G + VR+ + GG QA
Sbjct: 107 ELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVA 160
Query: 748 LER 756
L +
Sbjct: 161 LSK 163
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 70.5 bits (165), Expect = 3e-13
Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
E E+ R V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 505 KI*L-AYQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 675
+ L A +TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKE 183
Query: 676 FGHTSYVRNTCVFGGAPKREQARDLERGV 762
+ V GGA +R +A L +GV
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKLVKGV 212
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L +G +++ATPGRL+D L+
Sbjct: 208 LVKGVNLLVATPGRLLDHLQ 227
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 66.9 bits (156), Expect = 3e-12
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVH 573
F+ + + + G+K PTPIQ + P+ + G+ + +TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQ 738
+ + AL+L+P RELA Q +V DF + +R+ + GG EQ
Sbjct: 131 LKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQ 182
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 66.1 bits (154), Expect = 6e-12
Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +1
Query: 367 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKT 543
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK +A +TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 544 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 666
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 65.7 bits (153), Expect = 7e-12
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVH 573
F+ N +++ V G+K+ TP+QA P+ + K + + TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 675
+ + G G AL++APTRELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 62.9 bits (146), Expect = 5e-11
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVH 573
F+ N + +G+ +G++ PT IQ + P+A+ GK I A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
+ +P ++ L+L PTRELA Q VA + + GG + Q ++L
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 754 R 756
+
Sbjct: 379 K 379
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 705 VCVWWCS*KRASPGLGEGSKIVIATPGRLIDFL 803
+C+ S K L + IVIATPGR ID +
Sbjct: 363 LCIGGLSLKLQEQELRKRPDIVIATPGRFIDHM 395
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 61.3 bits (142), Expect = 2e-10
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
FE+ + G+ G++ P+PIQ + PIA+SG+ LA + G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKRE 735
++ + + L+L PTRELA Q QV G V+ GG R+
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRD 154
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 58.4 bits (135), Expect = 1e-09
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKI*LAYQTGSGKTLAYILPA 564
I F++ N + +G+ G++ P+ IQ + PI + Q+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 565 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQAR 744
+ I+ +++ AL+LAPTRELAQQIQ+V G V GG R+
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMA 132
Query: 745 DLERGV 762
L+ GV
Sbjct: 133 ALQAGV 138
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 58.0 bits (134), Expect = 1e-09
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI 510
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G+
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 511 *LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 687
+A Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDH 115
Query: 688 SYVRNTCVFGGAPKREQARDLERG 759
V+ GG + L+ G
Sbjct: 116 MNVQCHACIGGTSVGNDIKKLDYG 139
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 57.6 bits (133), Expect = 2e-09
Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LAY---QTGSGKTLAYILPAIVHINNQPP--IRRGDG 609
M PT IQ+ P ++ A+ QTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 610 PIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGV 762
A+++APTREL QQI VA + + ++ + V GG K+ + + +GV
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGV 270
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 753 EGSKIVIATPGRLIDFLE 806
+G I+I TPGRL D LE
Sbjct: 268 KGVNILIGTPGRLADHLE 285
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 57.2 bits (132), Expect = 3e-09
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI 510
EE E+ + + +F E + +K + T IQ Q P A+ G+
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 511 *L-AYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 687
L A +TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 688 SYVRNTCVFGGAPKREQARDLER 756
+ GG +E+ L R
Sbjct: 138 HSFSAGLIIGGNNYKEEKERLSR 160
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.4 bits (125), Expect = 2e-08
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
F + ++ +K + EPT IQ + G+ + +TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
+ P G AL+L PTRELA QI + A G +++ + GG Q+ DL
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 754 R 756
+
Sbjct: 124 K 124
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 732 RASPGLGEGSKIVIATPGRLIDFL 803
R S L + +V+ATPGRL D +
Sbjct: 117 RQSIDLSKRPHVVVATPGRLADLI 140
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 52.8 bits (121), Expect = 6e-08
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG---KI*LAYQTGSGKTLAYIL 558
++ FEE + +G+ +M +++P+ IQ + P+ +S + Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 559 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 699
+ ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.0 bits (119), Expect = 1e-07
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Frame = +1
Query: 364 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAYQ--TGSG 537
S ++ P + E A+ + + G+++ TP+Q + + Q TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 538 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFG 717
KTLA++L A + P +++L+PTRELA QI + A + + +R + G
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG 148
Query: 718 GAPKREQARDLERG 759
G K + + RG
Sbjct: 149 GNSKMREENAIRRG 162
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 49.6 bits (113), Expect = 5e-07
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Frame = +1
Query: 448 GYKEPTPIQAQGWPIAMSG-KI*LAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 618
G+ +P PIQ+ P A G I TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 619 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 756
LV+APTRELA QI Q + +R + GG ++Q R L +
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNK 241
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 49.2 bits (112), Expect = 7e-07
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ-QGVKTMGYKEPTP 468
P P++ ++ +++ + V+G +NP+ EE FP+ + + +K E T
Sbjct: 18 PQPSIKEKEAKKLQGITKG-KAKVTG---NNPVDPIEE--FPEGILCENLKKQNITECTT 71
Query: 469 IQAQGWPIAMSGKI*LAYQ-TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTREL 645
IQ P S + LA TGSGKT+AY+ P + + P G A+++APTREL
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTREL 127
Query: 646 AQQIQQVA 669
+QI + A
Sbjct: 128 CEQIYRQA 135
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.003
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 606
+ + G++ P+ +Q P ++ G L ++G GKT ++L + I P+ D
Sbjct: 64 RAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---D 117
Query: 607 GPIA-LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGG 720
G ++ LVL TRELA QI+ A F + VR +GG
Sbjct: 118 GEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGG 157
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 35.1 bits (77), Expect = 0.012
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 502 GKI*LAYQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 657
G + ++ TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 174 GDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 657
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 657
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 610 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
PI ++ +P E+ ++V D Y+ TC+ P+ E + DLE
Sbjct: 93 PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSDLE 136
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +1
Query: 226 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 387
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 388 IQYFEEANFPDYVQQGVKT 444
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 496 MSGK-I*LAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 651
+SGK + + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 4.2
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -1
Query: 238 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 92
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 91 IPVT 80
PV+
Sbjct: 198 APVS 201
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +3
Query: 156 DLATVAIDLEDLEDLVGKKNSLEVRTCVAQIGICF 260
D++ + + + + +NS+++ +C+ Q+G CF
Sbjct: 276 DISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.3
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = +3
Query: 528 GFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRFW 680
GF + G + HC H++ AY E F Y R++T + C R W
Sbjct: 33 GFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRLW 89
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 7.3
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 253 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 110
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 597 PNRRLVVYVHNGWQDVGQRFAGTRLVRQLNLSRHSYRP 484
P+ RL+V D+ +R R+ +L LSR + P
Sbjct: 477 PHSRLIVVAVANTMDLPERILSNRISSRLGLSRVPFEP 514
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -3
Query: 185 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 27
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 7.3
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -2
Query: 525 LVRQLNLSRH--SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYL 352
LV +L+ + H +Y L +G H L ++ + F K ++ + + SY+
Sbjct: 674 LVNRLSTTGHFLAYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYV 733
Query: 351 VIISVLFDFIW 319
+I+ + +W
Sbjct: 734 LILCPVHPIVW 744
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 94 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 14
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 448 PLSLHLVAHNQENL--LLQSIE 389
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,645
Number of Sequences: 5004
Number of extensions: 73629
Number of successful extensions: 269
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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