Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0891
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       82   7e-18
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.4  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 81.8 bits (193), Expect = 7e-18
 Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
 Frame = +1

Query: 343 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA- 519
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G+  +A 
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMAC 239

Query: 520 YQTGSGKTLAYILPAIVHINNQP----PIRRGDGPIALVLAPTRELAQQIQQVAADFGHT 687
            QTGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   
Sbjct: 240 AQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLN 299

Query: 688 SYVRNTCVFGGAPKREQARDLERG 759
           S ++    +GG     Q   L  G
Sbjct: 300 SILKTVVAYGGTSVMHQRGKLSAG 323



 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 747 LGEGSKIVIATPGRLIDFLEKG 812
           L  G  I++ATPGRL+DF+EKG
Sbjct: 320 LSAGCHILVATPGRLLDFVEKG 341


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 571 AQWLARCRPTFCRNPFGTPTKSFQ 500
           AQ+   C P+  R P G PT   Q
Sbjct: 388 AQFATPCTPSPPRGPGGVPTSVIQ 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,713
Number of Sequences: 438
Number of extensions: 5282
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)